Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bacillus cereus AH820

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
9191	ATAATATACTATGATATATTATAAA	Design primers
173115	TTCCGTTTTTTTATCTTCCGTTTTCTTGTCTTCAGATTTTTTTTC	Design primers
202558	ATATAATTAATTATAACTAAATATAACTAA	Design primers
432618	CTGCCACCAGAACCACTGCCACCAGAACCGTTGCCACCCGAGCCATTGCCACCAGAACCGTTGCCGCCAGAACCG	Design primers
432697	CACCCGAGCCACTGCCACCAGAACCATTGCCACCCGAGCCATTGC	Design primers
432743	ACCAGAACCGTTGCCGCCAGAACCGTTGTCACCAGAACCACTGCCACCAGAACCGTTGTCACCAGAACCGTTGCCGCCAGAACCGTTGTCACCAGAACCACTGCCACCAGAACCGTTGCCGCCAGAACCATTGCCACCAGAACCATTGCCGCCAGAACCGTCGTCACCAGAACCGTTGCCGCCAGAACCATTGCCACCAGAACCGTTGCCGCCAGAACCGTCGTCACCAGAACCGTTGCCGCCAGAACCATTGCCACCAGAACCGTCGTCACCAGAACCGTTGCCGCCAGAACCATTGCCACCAGAACCGTCGTCGCCAGAACCGTTGTCACCCGAGCCGTTGCCGCCAGAACCGCTACCATCGGAACCATTGCC	Design primers
435443	GGCGAAGGTGAAGGCGATGACGAA	Design primers
524803	GAAAAAGCAAAAGAAAAAGGAAAA	Design primers
534910	GGAAAA-AGAAAA-AGAAAA-AGAAAA-AGAAAA	Design primers
544090	ACGCGAACTATTCGTGAACTATTTGCGAACTAT	Design primers
577387	AGAAAAAGATAAAGATAAAGAATA	Design primers
639260	TTC-TTT-TTC-TTC-TTG-TTT-TTC-TTC	Design primers
656118	ATCATCATAATCATCATCACCATC	Design primers
706019	TTTTTACTTTGCTTTTTGCTTTACTTTTTACCTTGC	Design primers
765174	TGTTTGAGTTTGTGATTGTGTTTG	Design primers
780272	TTAAAGTTAAATTTAGAGTTACAG	Design primers
792715	GAAAATTAAAATGATAATGAAAAA	Design primers
852494	TTTTTGAGCTTTAGCTGCTTCACGAGCTTTAGCTGCCTCTTGAGCTTTAGCCGC	Design primers
852558	TCAGCTGCTTCTTGAGCTTTAGCTGCTTCACGAGCTTTAGCTGCCTCTTGAGCTTTAGCCGCTGCTTGAGCTTCAGCTGCTTCTTGAGCTTTAGCTGCTTCTTGAGCCTTAGCTTCTGCTTGAGCTTCAGCTGCTTCTTGAGCT	Design primers
873531	AAAGAAGTGGACAGAAGGGGAAAGAACTGT	Design primers
921205	CAGAGAATCCAGGCGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCGGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGTGAAGAAACAGAAAAGCCAGGCGGAGAGA	Design primers
1016198	TTTTTATTTATTTTCATTTCATTTTTTTTA	Design primers
1180592	TAATTTATAATAATTTTAAATAAATAATAA	Design primers
1234704	TCTCCAGTTGGCCCAGTTGGTCCAGTTGGTCCAGTTGGTCCAGTTGGCCCAGTC	Design primers
1234776	GGCCCAGTC-GGCCCAGTC-GGTCCAGTC-GGCCCAGTT	Design primers
1242796	AATAGAACA-AGAAGAGCA-AGAAGAACA-AGAAGAACA-AAAAGAACA-AGAAGAACA	Design primers
1267896	TTTCGGTTCTTTTGGTTCTTGCGGTTC	Design primers
1319551	TTCTTCAGCAGGTTTTTGCTCAGCTGGTTTTTGTTCAGCAGGTTT	Design primers
1319647	TTCAGCAGGCTTTTGCTCGGCAGGTTTTTGCTCAACAGGCTTTTG	Design primers
1461688	GAAGAAAAGAAGAAGAGAAGAAAAGAAGAAGA	Design primers
1463915	CCCAGTAGC-GCCAGTAGC-GCCAGTAGC	Design primers
1498127	AAATATTT-AAATATTT-AAGTATTT	Design primers
1499885	AAAAATAAAATAAAAACAAAAAGAA	Design primers
1548664	TTGTTGTTGTTCTTGCTGCTGTTG	Design primers
1649576	TTTTTTTGTATTCTTTTTTATATTTTTGTA	Design primers
1724399	TATTAAATTATATTTAAATAAGTTAAATTA	Design primers
1724533	ATAAGAATCTATAAAAAACTATAAAAATTT	Design primers
1739914	TTGTAGGTTTTTGTATGATTTTGTAGGTTC	Design primers
1858994	AATTT-ACTTC-ACTTC-ACTTC-ACTTC-ACTTC-ACTTC-ACTTC	Design primers
1961129	ACAAAACAAACGAACACAACGAACGAACACAACGAACGA	Design primers
2055598	TTGCTGTTGTTGTCGCTGTTGCTA	Design primers
2065749	TAATGAATATAAAGAATATAAAGAATA	Design primers
2107053	ATCCAAATCCGAACCCGGAGCCAAATCCAAATCCGG-GTCCAAATCCGAACCCAGAACCAAATCCAAATCCGG-GTCCAAATCCGAACCCAGAACCAAATCCAAATCCGG-GTCCAAATCCGAACCCAG	Design primers
2107180	TCCAAATCCAGAACCAAATCCCAAACCAAA	Design primers
2227157	TTGCAAACTAAACTGCAAACAAAAATGCAAACTAAA	Design primers
2234791	ATGAAAATAAAAATAAAAATAAAAATGAAA	Design primers
2243413	AAA-AAG-CAA-GAA-GAA-TTA-AAA-AAA-CAA-GAA-GAA-CTT-AAA-AAA-CAA-GAA-GAA-GAA	Design primers
2243491	CAGGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAA	Design primers
2324007	ATTTCTTTTTCTATTTCCATTACT	Design primers
2342215	GGTGGGACCAGTAAAGCC-TGTGGGACCAGTAAAGCC-TGTGGGACCAGTGATGCC	Design primers
2342270	GTAGGACCAGTGATGCCT-GTAGGACCAGTGATGCCT-GTGGGACCGGTGATGCCT-GTAGGACCAGTGATGCCT	Design primers
2344950	CAACAGGCC-CAACAGGCC-CAACAGGTC-CAACAGGTC	Design primers
2344998	CAACAGGCCCAACAGGTCCAACAGGTC	Design primers
2345036	GCAACAGGT-CCAACAGGT-CCAACAGGT	Design primers
2345128	AGCAGGTCC-AGCAGGTCC-AACAGGTCC	Design primers
2345234	CCGACAGGAGCAACAGGTCTAGCAGGAGCAACAGGTCCAACAGGAGCAACAGGT	Design primers
2348285	TT-AT-TT-TG-TT-TT-GA-TT-TT-GT-TG-TT-TT-TT-TC-TT-T	Design primers
2351398	TTTTTTGTTTTTTTATTATTTTTCT	Design primers
2447273	AAAGATAAAAATATAAAACGATAA	Design primers
2546943	ATAATTATGAATATGATTACGAATTTAATTATGACT	Design primers
2653391	CAATCCCAATTACAATCCCAATCACAATTCCGATTA	Design primers
2711862	ATAAATATAAACATGAATATAAAT	Design primers
2751063	CTTAGGTTCATAGGTTCATAGGTT	Design primers
2872176	GGAAATGAAAATGGAAAATGAAAT	Design primers
2900300	TATATATACTTTATATACAATATATAC	Design primers
2982008	TGGCTG-CGGCTG-CGGCTG-CGGCTG	Design primers
3048427	TATTACTATTTTT-TATTACTATTTTT-TATTACTAATGTT	Design primers
3128449	AATTTTAATTATGATTTTGATTTT	Design primers
3207910	TT-AT-AT-TT-TT-AG-AT-TT-TT-GT-AT-TT	Design primers
3418884	TT-AT-CT-TT-TT-AT-CA-TT-TT-AT-CT-CT	Design primers
3429990	TCTAT-TTAAT-TTAAT-TTAAT-TTAAT-TTAAT	Design primers
3496263	TATCAACATCAATAGCAATAACAA	Design primers
3554098	CGGGTGCTACTGGTGCTACCGGTGCTA	Design primers
3561952	ATCAAAAACAATCACAAACGATTATAAACA	Design primers
3588834	ATAAGAAATTAAAAAAAATTATAAAAAATG	Design primers
3628950	TTGTTCCTCTTTCTTCGGTTCTTCTTTCTTTGGTTCCTCTTTTTT	Design primers
3743316	AATCTTCAAACCTTCAAATCTTCC	Design primers
3821425	CAAGTGCAAGTCCAACTGCAAGTC	Design primers
3843460	TCACAACCACAATCTCAATTACAA	Design primers
3887540	TTAACATTTTTTGAACATTTATTGAACTTTTTT	Design primers
3970289	CTTGCTCTGCAACTTGCATTGCAACTTGCTCTCCAA	Design primers
4001022	TCTCTCTATTTCTCTATTTCTCTA	Design primers
4095783	CCAATATCGACAGCAATATCAACAACAATATCAACA	Design primers
4095828	ACAACAATACCCGCAACAATACTCACAGCAATACCA	Design primers
4096208	AAAAAAAAAGAAAAAGAAAAAAAAT	Design primers
4164813	TCGTCCGCAAATCGTTCGCAAATCCTCCGCGAA	Design primers
4174023	GTT-CTT-CTT-GTT-GTT-GTT-CTT-TTT-CTT-CTT-CTT-TTT-CTT-CTT-CTT-TTT	Design primers
4213477	CTTCTTCTTCAGCTTTTTTCTGTTCTTCTTCAGCCTTTAGCTTTTCTTCTTCTTCTTTCTTCT	Design primers
4263862	CTTCTTCTTCATCCTCTTCTTCTG	Design primers
4265247	TGCACTTCTTTTTGTGGTTTTACCTGCACTTCTTTTTGCGGTTTCACCTGCATTTCCTTCTGCGGTTTTACCTGTACTTCTTTTTGTGGTTTCACTTGCATTTCCTTCTGTGGTTTTACTTGCACTTCTTTTTGTGTTTGTTGC	Design primers
4297178	CTTTAAATACTTTAACTACTTTAAATA	Design primers
4394750	ACCCGTTGCTCCCGTTGGACCTGTTGCTCCCGTTATTCCTGTCGCTCCCGTTGGACCCGTTGCTCCTGTTATTCCTGTCGCTCCCGTTGGACCCGTTACTCCCGTTAT	Design primers
4394859	CCTGTTGCTCCTGTTATT-CCTGTTGCTCCTGTTATT-CCTGTCGCTCCTGTTACT	Design primers
4394916	GTTACTCCCGTTGCTCCTGTTGCTCCTGTTGCTCCTGTTGCTCCCGTTATTCCT	Design primers
4394973	GCTCCCGTCGGACCTGTTGCTCCCGTTGGACCCGTTGCTCCCGTTGCTCCTGTT	Design primers
4395028	CTCCCGTTG-CTCCCGTTG-CTCCTGTTG-CTCCCGTTG-CTCCCGTTG-CTCCCGTTG-CTCCCGTTG	Design primers
4395108	GCTCCCGTT-GCTCCCGTT-ACTCCCGTT	Design primers
4395136	TTCCTGTTGCTCCTGTTATTCCTGTCGCTCCCGTTATTCCTGTCGCTCCTGTTA	Design primers
4395191	TCCCGTTGC-TCCCGTTGC-TCCCGTTAC-TCCCGTTAC-TCCTGTTGC-TCCTGTTGC-TCCCGTTGC	Design primers
4413746	CCGTCTTGGCTGTCGTTTCCGCCTTGGTTGTTGTTTCCGCCTTGGTTGTCATTTCCACCTTGGTTGTCGTTTCCACCTTGGTTGTCGTTT	Design primers
4414236	TATCTACGTCTGGTTGTT-TGTCTCCGTCTGGTTGCT-TGTCTCCGTCTGGTTGTT-TGCCTCCGTCTGGTTGTT-TATCTCCATCTGGTTGTT-TGCCTCCGTCTGGTTGTT-TATCTCCGTCTGGTTGTT-TATCTCCGTCTGGTTGTT	Design primers
4458358	CTTTATTTCTTTGTTTCTTTGTTT	Design primers
4493895	TATTCTCTTATGCTCTTGTTCTCT	Design primers
4550829	CTTCTTCTACTTCTTCTGCTTCTG	Design primers
4581955	CCCGTGTTTCCCGTTGCTCCGGTGCTTCCCGTCGCTCCCGTATTTCCTGTTGCTCCCGTACTTCCTGTTGCTCCTGTATTTCCCGTTGCT	Design primers
4582046	CTGTACTTCCTGTTACCCCAGTACTTCCTGTTGCTCCCGTACTTCCTGTTACCCCAGTACTTCCTGTTGCTC	Design primers
4582276	GCTCCCGTATTTCCTGTTGGACCCGTACTTCCTGTTGCTCCTGTATTTCCCGTTGCTCCCGTACTTCCTGTT	Design primers
4582349	CCCCAGTACTTCCTGTTGCTCCCGTACTTCCTGTTACCCCAGTACTTCCTGTTG	Design primers
4582996	GCTCCCGTATTTCCTGTTGGACCCGTACTTCCTGTTGCTCCTGTATTTCCCGTTGCTCCCGTACTTCCTGTT	Design primers
4583069	CCCCAGTACTTCCTGTTGCTCCCGTACTTCCTGTTACCCCAGTACTTCCTGTTG	Design primers
4583257	GCTCCCGTATTTCCTGTTGGACCCGTACTTCCTGTTGCTCCTGTATTTCCCGTTGCTCCCGTGTTTCCTGTCGCTCCCGTACTTCCTGTT	Design primers
4583348	CCCCAGTACTTCCTGTTGCTCCCGTACTTCCTGTTACCCCAGTACTTCCTGTTG	Design primers
4583680	GCTCCCGTATTTCCTGTTGGACCCGTACTTCCTGTTGCTCCTGTATTTCCCGTTGCTCCCGTGTTTCCTGTCGCTCCCGTACTTCCTGTT	Design primers
4584112	GCTCCCGTATTTCCTGTTGGACCCGTACTTCCTGTTGCTCCCGTTTCTCCTGTTGGACCCGTGTTTCCTGTT	Design primers
4593183	TGGTGACCTTGGTGGCCTTGGTGGCCT	Design primers
4593211	GATGACCGT-GGTGACCGT-GGTGACCGT-GGTGACCGT-GGTGACCGT-GGTGACCGT	Design primers
4643887	TCTGGTTTCACTTCCGGTTTTACTTCTGGTTTCGGT	Design primers
4663401	GGCTTAGAAAAA-GGTATAGAACAA-GGTATAGAGCAA-GGTATAGAACAA-GGTATAGAACAA-GGTATAGAACAA	Design primers
4677212	AA-AA-AG-GA-AA-AA-AA-GA-AA-AA-AA-GA	Design primers
4678685	CCGCCATAACCGCCGTAACCACCATAA	Design primers
4752995	ACTTTTACTTCTTCTTTTACTTTTACTTTA	Design primers
4874731	TTTTTTCATATTTTTTTCTACTTTTTCATA	Design primers
4976204	TATCTTCTTTTTTAGGTGCTTCTTTTTTAGGCTCTTCCTTTTTAGGCTCTTCTTTTTGAG	Design primers
5021582	AATAACAAT-CAAAACAAT-AACAACAAT-AACAACAAT-AACAACAAT-AACAACAAT-AACAACAAT-AACAACAAT	Design primers
5072833	TTCTTTTCTATACTTTTGTTTTGTT	Design primers
5208901	TTTCTTCTCTTTTATATTCTTTTCT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

9191

ATAATATACTATGATATATTATAAA