Microsatellites /Tandem Repeats database

Genome: Buchnera aphidicola str. 5A (Acyrthosiphon pisum)

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9569TAATTTTTTTAAATTTTTTAAGTTTTTDesign primers
13621ATTTTTATTATTATTATTATTTTCDesign primers
26156ATATTTCTTTAATATTTTTTTTATTTTTCTCTADesign primers
27584TTTTTTTTTTATTTGTTTTTTTTADesign primers
41611TTTTTCTATTTCTTTTTTTTTGTCTTTTTGDesign primers
60538CTGCATCTTCATCTGTATCTGTATDesign primers
62672ATATAATTTTATAATTATAGAATTDesign primers
71993ATTTTTATTTATATTATTATTTTTDesign primers
82488ATAAA-ATAAA-AAAAA-AAAAA-ATAGADesign primers
121741AAAAAGAACAAGAAAAAAAAAAATDesign primers
121806AAAAAAAATCATATAAAATCAAAAATAAACDesign primers
161793CCACCAAAAATATCACCAAAAACATCCCCAAAAATADesign primers
172970TT-TT-TT-TT-AT-TT-TT-CT-TT-TT-AT-TT-TDesign primers
181879TTTTTTTCATTATTATTTCATTTTTTTTTGGTTDesign primers
200915TTTTTTTATTTTTTCTATTTTTTCTDesign primers
211422TTTTTTTATAATTTTTTCTATTTCTTTATGDesign primers
215290AAATATAATTAAATATTTTTTTATATAATTDesign primers
232720TTTTTTATTTCTTTTTTTATTATTTTTTTADesign primers
238102TTTATTATATTTTTTTTTAGTTTTTDesign primers
285451TT-TT-AT-TT-TT-TG-AT-TT-TT-CT-AT-TTDesign primers
287470AAATATTTTTTATTATTTTTATAAATTTTTDesign primers
294982AAACTAAAAAAGAAACAAAAGAAGAAAATAAAATAGDesign primers
309714AA-AA-AA-CA-AA-AA-GA-AA-AA-AA-TA-AA-ADesign primers
314151TTATTATATTAATATATTATTATADesign primers
337855AATAATAAAAATAATAATAATAAGDesign primers
353324ATTATGAATATGATTATGATTATGDesign primers
358634ATAAATTAAAATAACATAAAAAAAADesign primers
366136ATAGAAAAAAAAAAAAAAAAATACAAACAADesign primers
367582TATAGAATAAATATTCTATAATAAATATTATATAATAAATATTATATAATAAATATTATATAATAAATAADesign primers
383739AATAAATAAAAATTAAAAAAATTAATTAAADesign primers
385176ATAATAAATATTATTATAAATATTATTAGAAATATTDesign primers
391064TTATT-ATATT-ATATT-TTATT-TTATTDesign primers
411582CGCTCGACC-TGCTCGACC-TGCTCGACCDesign primers
419267CT-CT-AT-TT-TT-TC-TA-TA-TT-TT-TT-AT-GT-AT-TT-TT-TDesign primers
427164ATTTTTATAAAATTTAATAATTTTTTACAADesign primers
429926AGATGGTGGAAATGGTGGAGATGGTGGDesign primers
436275ATA-AAA-AAA-AAA-TAT-TAA-AAA-AAG-AAG-AAA-AAADesign primers
436326AAAAAAAAATAAAATTAAAAAATAADesign primers
442595AA-AA-GA-AA-AA-CA-AG-AA-AA-AA-TA-GA-AA-ADesign primers
446683ATCAAATT-ATCAAATT-ATCAAAATDesign primers
470577AA-AA-AA-AA-AT-TA-AA-AA-AA-AT-AT-AA-ADesign primers
484017AAATTTATTAAAATCAATTATAAATTATTADesign primers
495390ATAAAAAAAAATAAGATAATATAATDesign primers
503232AAAAAAATAAATAAAAAAACAACAADesign primers
513412TTTATTTTGTTTTAATATATTTTTTDesign primers
520395GAAAAAAA-TAAAAAAA-TAAAAAAADesign primers
527139AAAAAACAAATAAAACAAAAAAAATDesign primers
527424AAAATTAAAAAATTTAAAAATAAADesign primers
544209AAAATATTAAAAAAATATGAAAAAATTAGTAAADesign primers
568440TTTTTTAAAAAATTTTTAAATATTTTTTTAAAADesign primers
609070TTTAAATAATTATAAATATTTTGAGATAATDesign primers
610946TATGAAAAAATATGAAAATCAATAAAAAAADesign primers
613152TAA-TAA-AAA-AAA-AAA-AAA-AAA-AAA-AAA-AAADesign primers
634449TTTTATTGTTTTATTATTTTTTTGDesign primers
640871TTTTTTGATATTTTCTTATATTTTTAGAAADesign primers

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