Microsatellites /Tandem Repeats database

Genome: Streptococcus pneumoniae 70585

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
16551GTTTAAAAAAGCTTAAAAATCTTCAAAAAADesign primers
18334ATTGGTCTTGTTTAGTCTTGAGAGGTCTTGDesign primers
24834TAATTTTTCGATATTTTTCGGTATTTTTCGDesign primers
36199TTCTGGGAAAATCTTGGGAAAAATCTGGGAAAADesign primers
72391AGCAAACT-AGCAAACT-AGGAAACTDesign primers
88717AGTTGAAATTGAAGTGGACGTTGADesign primers
254765CATGTTTTCGCTTGTTTTAGCATTTTTACGDesign primers
271309TAATTTTTCGATATTTTTCGGTATTTTTCGDesign primers
422714GAAAAATTAGATAAATTAGATAAATTADesign primers
647687TTATAAAATCTTATAATACCTTATAATACCDesign primers
835131TATTCCTTTGCATTCTTTTGCATTCCTTGGDesign primers
1159417AAAAACAAACACACAAACAAATACDesign primers
1268324AATTA-AATAA-AATGA-AATGA-AATAADesign primers
1287688AGCAGCACCAGCATCAGCAGCATCAGCTGCAGCAACDesign primers
1322873AAGCAAAT-AAGCAAAT-AAACAAATDesign primers
1338641ATTTCATTTAAGTTCTTTTCCTTTCDesign primers
1461787GCCATCTTTGCCGTCTTTACCATCTTTDesign primers
1603062AACAATCGATTACCATCGATAGCAATCGAADesign primers
1687891ATGTACTTGCTGAAGCGGAGGCGCTTGTACTTGCTGAAGCTGACGCACTTGTGCTTGCTGAAGCCGAGGCACDesign primers
1688474TGCTGAGGATGACGCACTGGTACTTGCTGACTCTGATGCACTGGTACTTGCTGAAGCCGACGCACTGGTGCTDesign primers
1688681GCTAGTACTTGCTGAAGCTGAGGCGCTAGTACTTGCTGAAGCTGATGCACTAGTACTTGCTGAGGCTGACGCDesign primers
1690421TGACGCACTGGTACTTGCTGAAGCTGAGGCGCTAGTACTTGCTAAAGCCGAGGCACTGGTGCTTGCTGAGGCDesign primers
1690494GACGCACTCGTTGATGCCGAAGCTGACGCACTCGTTGATGCTGAAGCCGAGGCACTGGTTGACGCTGAAGCTDesign primers
1690815GTTGATGCTGAAGCTGAAGCGCTTGTCGATGCTGAGGCTGACGCACTTGTCGACGCTGAAGCTGAAGCACTCGTTGACGCTGAAGCTGATGCACTCGTTGACGCTGAAGCTGACGCGCTGDesign primers
1691040GAAGCTGAAGCACTGGTACTTGCTGACTCTGATGCACTGGTACTTGCTGAGGCTGACGCACTTGTGCTTGCTDesign primers
1691769GCACTCGTTGACGCTGAAGCTGAGGCACTTGTCGATGCTGAGGCTGAGGCACTGGTTGACGCTGAAGCTGAGDesign primers
1691868CTTGTTGATGCTGAAGCCGACGCACTCGTTGATGCTGAGGCCGAGGCGCTGGTTGACGCTGAAGCTGATGCADesign primers
1692754CAGACGCACTCGTTGACGCTGAAGCCGACGCACTCGTTGACGCTGAAGCTGACGCACTGGTTGATGCGGAAGDesign primers
1759184AAGACCAAGGCCAAAACCAAGGCCDesign primers
1982558TTTTTCTAATTTTTTTTTATTTTTTCAACTDesign primers
2087512CAGAAGAAGAAGCAAAAGCAGAAGDesign primers

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