Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Desulfovibrio magneticus RS-1

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
20543	CTGGCCCGGGCCATGGCCCTGGACCCGGCC	Design primers
24809	GCGGCCAGGGCGGCCAAGGCGGCCGGGTCGGCCAGG	Design primers
40634	AAGCCAAAGCCGAGGCCAAGGCCAAAGCCG	Design primers
71377	CCCTCGCCCTCACCTTCGCCGTCG	Design primers
93302	TATAA-TATAA-TATAA-CATAA-TATAG	Design primers
159014	TGACCGTTGGCTACCCGTTGGCTGTCCGTTGGC	Design primers
179388	GACGGCGGC-GACGGCGGC-GAGGGCGGC	Design primers
207331	TGGGCCAGGGCCTGGGCATCGGCC	Design primers
237166	CCGGCACCGCCATCGGCACCCGCA	Design primers
259865	GTGGCCTTGGCCGAGGCCGTGGCC	Design primers
267237	CGCCCTGGCGGGTCCGGGCA-GCGCCCGGCGGGTCCGGGCA-GCGCCCGGCGGGTCCGGGCA-GCGCCCGGCGGGTCCGGGCA	Design primers
272035	AAACGA-ATACGA-ATACGA-ATACGA	Design primers
278481	GTTTGGCGGGCTTGGCGGATTTGGCGG	Design primers
295971	ACATGCCGC-CCATGCCGC-CCATGCCGC	Design primers
311804	GCCCCGGCCACGGCTCCGGCCACG	Design primers
366673	CGGCCACGGCCTTGGCCACGGTCA	Design primers
387834	CTGTCCCTGACCCTGGCCATGTCCCTGGCC	Design primers
416866	CGG-CAG-CAG-CGG-CCG-CAG-CGG-CGG-CAG	Design primers
425592	CGGCCGACGCGGCCGGCGCGGCCGAGG	Design primers
454520	CC-CC-GC-TC-CC-GC-TC-CC-GC-GC-CC-GC	Design primers
466369	CGGCCAGGGCGGTCAGGGCGTCCAGGG	Design primers
467965	GCGGCGGCGGCCACGGCGGGGGCG	Design primers
494555	AGAGGAAGGGGAAGAGGAAGACGA	Design primers
495032	TTCCTCTTAATCCTTCTTAATTCTTCTTTA	Design primers
515867	CGGCCCACAGGCCGGCCCCCAGGACCGACCACAGGC	Design primers
516063	GGCGGCGGCGACGGCGGCGGCGTC	Design primers
528610	CTGCCCGGCCGGCTCGGCCTGCCCGGCCGGCTCGGTCTGCCCGACCGATTCGGC	Design primers
536817	GCGCCGACGCCGGCTCCGGCCCCG	Design primers
556889	GCCCTGGGCCTGTCCCTGGCGCTG	Design primers
628961	GGCTTGGCCGGCTCGGCCGGCTTGGCC	Design primers
629068	TTTGGCCTCGGGTTTGGCCTCAGGTTTGGTTTCGGG	Design primers
686699	AAGCGGCGGCAGAAGCGGCGGCCGAGGCGGCGGCTG	Design primers
707575	GATGATGACGATGAAGATGATGAG	Design primers
747488	GGACCAGGCCGCCGCCCAGGCCGCCGCCCAGGCCGC	Design primers
747813	TGGCCGTGGGCGCGGCCGTGGCCC	Design primers
782463	TCTTCTTCTTTTTCTTCTTCCTCTTCTACT	Design primers
784984	CCGGCCACGGCCGCGGCCTCGGCC	Design primers
786455	CCGGGGCCGGGCGCGGGGCCGGGG	Design primers
804515	GGCCAGGGA-GGCCAGGGA-GGCCAGTGA	Design primers
805834	GCGAAAAAAGCGAAAGAAGCGCAAAAA	Design primers
809877	TGATGCTGCGGTGAGGCTGCCGTGGCGCTGCGG	Design primers
815460	CTGGCCCGGCTGCTGGTCCGGCCGCTGGTCCGGCCG	Design primers
858239	CGTCCGCCG-CGGCCAACG-CGGCCAACG-CGGCCAACG-CGGCCAACG-CGGCCAACG	Design primers
865938	CATGGCCATGACCATGCCCCTGGC	Design primers
887399	CCAGCCCGAGCCCCAGGCCCAGGC	Design primers
889159	CGGCGGTGGCGGCGGCGTCGCCGG	Design primers
898661	GCCGAGGCCGCCGAGGCGGCCAAGGCC	Design primers
904889	GGCGGCATCGGCTTCGGCATCGGCTGCAGCATCGGC	Design primers
905339	CAGGGC-CACGGC-CACGGC-CAGGGC	Design primers
906435	ACGGCCTCGGCCACGGCCACGCCC	Design primers
954534	CGGGAAG-AGGGAAG-AGGGAAG-AGGGAAG	Design primers
958492	CCAGGG-CCAGGG-TCAGGG-CCATGG	Design primers
967633	CTTCGGCTCGCTGTTTGGGAC-GGGCGGCTCGCTGTTTGGGAC-GGGCGGCTCGTTGTTTGGGAC	Design primers
1003828	CGGCTGGGCCGCTGGGCGGCTGGT	Design primers
1181588	GGCGTCGTCGTCGGCTTCGGCGTA	Design primers
1181644	CGGGGCCGGGCGCGGCCGGGCGGCGCGGGA	Design primers
1182041	CGGCCA-CGGCGA-CGGCGA-CGGCCA	Design primers
1225564	CAGGCCACCAATGAGGAGCTCCTGGCCAGCAACGAGGAGCTGCAAAGCACCAACGAGGAGCTC	Design primers
1265702	GGCAGAGG-GGCAGAGG-GACAGAGG	Design primers
1273656	GCG-GCG-GCG-ACG-GCG-GCG-ACG-GCG-GCG-ACG	Design primers
1291177	GGCCAG-AGCCAG-GGCCAG-GGCCAG-GGCCAG	Design primers
1291746	TGGCCC-TGGCCC-GGGCCC-TGGCCC	Design primers
1381925	CACGGC-CACGGC-CAGGGC-CACGGC	Design primers
1410144	GGGCCAGGCCGTGCCCGGCCGGGCC	Design primers
1417801	CCCGGCCGGGGCCGGCCCGGCCAGG	Design primers
1443448	CCTGGCCGCCCTGGCCGGCCGGGCCGC	Design primers
1444467	CATCGACGGCATCGTCGGCATGGACGG	Design primers
1457435	CGCCGGCCAGGGCGGCGGCCAGGGCGGCGGCCATGG	Design primers
1473538	CGCAGCCGGTTGGCCGAAGCCCGCAGCCGGTTGGCCGAAGCTCGGCGCGGGTTGGCCGAAGGC	Design primers
1473744	AAGGCTGCACGGGTGGCTGCTGGGGCTGCATGGGCGGCTGCTGGGGCTGCATGGGCGGCTGCT	Design primers
1478354	TGGCCCTGGCCTCGGCCCTGGCCG	Design primers
1488342	CCCTGGCCCGGGCCATGGCCCTGG	Design primers
1494987	GAAGGAA-GAGGGTA-GAGGGTA-GAGGGTA-GAGGGAA-GAGGGAA	Design primers
1508685	CTCCGCCGCCGCCTCCCCCTCCGA	Design primers
1527818	CGC-CGC-CGC-TGC-CGC-GGC-CGC-TGC	Design primers
1528339	CCAAGCCCGAGCCCAAGCCCGAGC	Design primers
1576101	CTAACCCACGTCAACCCACGCCAACCCACG	Design primers
1615108	ACGAAGACGATGATGAAGAAGAAG	Design primers
1624027	CTTGTGACCAAAATCTCCATAGTCCGTGACCGAAATCTCCATAGTCTGTGACCAAACTCTCCATAG	Design primers
1636473	TCGGGCACGGCCTCGGGTTCGGCCTCGGGCAGGCCC	Design primers
1715062	GGCCACGGCCAGGGCCGCGCCCAC	Design primers
1721884	AGACCCGGCAGGGCTCTGCCCTGCACCCGCCAGGGCTTTGCCCTGGACCCACCAGGGCTTTGCCCT	Design primers
1767756	CCC-CGC-CGC-CGC-CGC-CGC-CGC-CGC	Design primers
1793315	TTCGGCCGTGGC-GTCGGCCGTGGC-GTCGGCCTTGGC	Design primers
1794623	GACGATGCCGATGACGGTGGCGAT	Design primers
1851651	TTTTCTC-GCTGGTC-GCTGGTC-GCTGGTC-GCTGGTC-GCTGGTC-GCTGGTC-GCTGGTC-GCTGGTC-GCTGGTC-GCTGGTC-GCTGGTC	Design primers
1855434	GCCACGGCCTCGTCCACGGCCAGG	Design primers
1872414	CCTGGGCCTGGCGCTGGGCCAGGG	Design primers
1910270	ACAGCGGTGCAGGAC-CGGGCGGTGCAGGAC-CGGGCGGTGCAGGAC-CGGGCGGTGCAGGAC-CGGGCGGTGCAGGAC-CGGGCGGTGCAGGAC	Design primers
1920858	GGCGGCGGCGACGGCTGCAGCGGC	Design primers
1931607	CCGGCGCGGCCGGCGTGGCCGGCGCGG	Design primers
1953580	AGATAA-AGATGA-AGATGA-AGATGA	Design primers
1968040	GCCCTGACCCTGGCCCGGGCGCTG	Design primers
1968065	CCCAGG-CCCAGG-CCCAAG-CCAAGG	Design primers
1968154	AACGGCAATGGCAACGGGAACGGC	Design primers
2000914	GTGGCCGGC-CTGGCCGGC-CTGGCCGGC	Design primers
2014731	GGATGGGCAGCATGGGCAGGAAGGGCA	Design primers
2025898	CCGGGCCGGGGCCGGGGCCGGGGC	Design primers
2086166	GGATAGCTCGGTATATCTCGTCATAGCTCG	Design primers
2088409	GAAGAC-GATGAC-GATGAC-GATGAC	Design primers
2106698	CCCGCCAAGGCGGCCACGGCCAAGGCGGCTGCGGCCAAAGCGGCC	Design primers
2117789	GCCCGGCCAGGGCCGGCCGGGCCCC	Design primers
2119130	TGGCGGCCAGGGCGGCCATGCCGGCCA	Design primers
2139082	GGCCAGCCCGCGGCTGCACCGCCCGCGGCTGCACCGCCCGCGGCT	Design primers
2153377	TGCCGTGGCCGTTGCCGTTGGCGT	Design primers
2179282	CACTCTT-TACTCTT-CACTCTT-CACTTTT-CACTCTT	Design primers
2211750	TCATCTTCTTCTTCGTCTTCATCG	Design primers
2223396	CCCCGTCCCGCCGCGCCGCGCCGCGCCCTG	Design primers
2231947	GGGCCGGAGCCGAGGCCGAGGCCG	Design primers
2269555	GCCGG-GCCGA-TCCGG-TCCGG-GCCGG	Design primers
2307753	CCG-CCG-CCT-CCG-CCT-CCG-CCG-CCT-CCG-CCG	Design primers
2389208	GGC-GTC-GTC-GTC-GGC-GTC-GGC-GTC	Design primers
2606143	TGCCGCGCTGCCGCGATGGCGCGC	Design primers
2650147	CGTGGA-CATGGA-CATGGA-CATGGA	Design primers
2682484	CCG-CCG-CCG-CCT-CCC-CCG-CCG-CCG	Design primers
2719110	GGGCCATGGCCAGGCCCAGGGCCG	Design primers
2728590	CCAGGCCCAGTCCCATGCCCTGGC	Design primers
2832786	AGGCCGGGGCCGAGGCCGAGACCG	Design primers
2941365	CGGCCAGGGCCAGGGCCACGGGCA	Design primers
3012365	TCTTTTCTTCTTTTTTCTCTTGTTT	Design primers
3024235	TCGGCTTCGGCCTGGGCTTCGGCC	Design primers
3040325	TAACGAGCTATGACGAGATATACCGAGCTA	Design primers
3086516	CCGGCCGACAAACCGGTTGACAAAGCCGCCGACAAACCGGCAGAGAAA	Design primers
3101245	GGCTGGGGTTGGGGCTGCGGCCGG	Design primers
3101635	GGCCGGGCCTTGCCGGACCGAGCCG	Design primers
3144330	GCCACGGCCCCGGGCACGGCCACG	Design primers
3169259	TCTTCCCTTCTCTTTTCGTCTCGTC	Design primers
3194124	CGTGGCCATGGCCGAGGCCCTGGC	Design primers
3202941	AGGCCGCCCTGGAACAGGCCAAGGGCGCCCTGGCCCAGGCCGAGGCCAGCCTGGCCCAGGCCA	Design primers
3215991	GTCGTGGTCGTTGTAGTGGTCGTG	Design primers
3219992	GCGACGCGTGGCGGCGCGGGCCGACGCGGG	Design primers
3228204	CCTGGCCGTGGCCCTGGCCCTGGC	Design primers
3258067	TGTCGGCCATGGCGGCCATGTCGGCCA	Design primers
3309115	TGGTGAGGCTGGTCAGGCTGGTCAGGC	Design primers
3339852	GCCACCCCAGGCCGCCCCCGGCGACCCCGGGCCGCGCCAG	Design primers
3431055	CAAGAGCA-GGAGAGTA-GGAGAGCA-GGAGAGCA-GGAGAGCA-GGAGAGCA-GGAGAGCA-GGAGAGCA	Design primers
3487521	CGGGGGCGGCCGGAGGCGGCCGGGGCCAGC	Design primers
3511265	TGGCCCGGGCCCTGGCCATGGACC	Design primers
3513210	GCGGCCGTG-GCGGCCGTG-GCGGCGGTG	Design primers
3517142	AGGAGGCAGGAGAAGGCCGGAGGCGGCCGG	Design primers
3546627	GGCCAA-GGTCAA-GGTCAA-CGCCAA	Design primers
3577669	GGTCCCGGCCGTCCCGGCGGCCCCGGC	Design primers
3612148	TGCGTTCAAATTCGTTAAAATTCGTTCAAT	Design primers
3715530	GGC-GGC-GGC-GGC-AGC-GGC-GGC-CGC-GGC-GGC	Design primers
3722572	GCCCGGCCCAGGCCGGCCAAGCCCGGTCCC	Design primers
3752693	GGTTCCGGTTTCGGCGCGGGAGCCGGTTCGGGCTTCGGCGCGGGGGCCGGTTCGGGCTTCGGCGCAGGGGCC	Design primers
3752807	GGCTCGGGCTGGGGCGCGGGCTCG	Design primers
3753294	CGGGTT-CGGGCT-CGGGCT-CGGGCT	Design primers
3775960	CCGCCGCCGCCGCCCCCGCCCCCG	Design primers
3786615	CACGCCCTCGCCCACGGCCACGGC	Design primers
3793099	CCAAGACCACGACCAAGACCAACA	Design primers
3807790	CGCTCGCGTTCGCGCTCACGCTCC	Design primers
3828211	CCTGGCCCTGGGGCTGGCCCCGGC	Design primers
3830248	GTTTGTTGCGGCGTTTGTTACGGCGTTTGCGGCGGC	Design primers
3837454	TTGGCC-GTGGCC-GTGGCC-CTGGCC	Design primers
3842416	CGTTGACCACCACCCAGCTGGCCGCCCTGTCCACCACCCAGCTGTCCGCCATGACCGCCACCCAGGTGGCCG	Design primers
3846948	GCCGCCCTGTCCACCACCCAGATCGCGGCCATGACCGCCACCCAGATCGGCGCGCTGACCACCACCCAGGTC	Design primers
3849081	CTGGCCGCCCTGTCCACCAAGCAGCTGGCCGCCCTGGCCGCCACCCAGCTGGCCGCCCTGACCACCACGCAA	Design primers
3849878	CGGCCTGACCGCCGCCCAGACCGCCGCCCTGACCAC	Design primers
3859236	TCATGGGCATCGTCGTCGGCATCGTCCTGGGCCTCG	Design primers
3890552	GAGGGGTTT-AAGGGGTTT-AAGGGGTTT	Design primers
3916091	TCGGCGTCGCCGTCGGCTTCGGCC	Design primers
3921896	GGCCTCGGCCGGTTTGGCCTCGCCGGGCTTGGCCGGGGCCGGCTT	Design primers
3964564	CTGGTCCTGGCCGTGGTCCTGGCC	Design primers
3965435	GGGCCGAGGCCGGGGACGTGGCCG	Design primers
3976472	GGCCGTGGCCCTGGCCATGGCCGT	Design primers
3984939	GCCGTGCCCGTGGCCCTGGCCGAG	Design primers
4015645	TAGAG-AAGAG-AAGAG-AAGAG-AAGAG	Design primers
4045914	ACCTCGGCCGGGGTCACCTCGACCGGCGTTTCCTTGGCCGGGGGC	Design primers
4051675	GTGGCCGCGGCCATGGCCGTGGGC	Design primers
4120202	TTTTTCTTTTTTTCTTTTTATTTTC	Design primers
4189040	CAGCATCCCAACGATCATCCCAACGATCATCCCAAC	Design primers
4190072	GGCGGGCGG-TGCGGGCGG-TGCGGGCGG-TGCGGGCGG	Design primers
4211950	CATGCCGCCGCCCATGCCGCTTCCCATACCACCGCCCATGCCGCTGCG	Design primers
4242615	GCCTGGGCGTGGCCCTGGCCCTGGGCCGGG	Design primers
4247636	ATGCTCATGTTCATGCTCGTGCTC	Design primers
4250092	CAGGGCCACGGCCATGGCCAGGCC	Design primers
4306862	CCGGCATGGCCTGCATGGCCTGCATGG	Design primers
4309529	GCCGGCTTT-GCCGGCTTT-GGCGGCTTT	Design primers
4310107	GGCGGACAC-GGCGGACAC-GGCGGCCAC-GGCGGCCAC	Design primers
4329444	GGCCGGGGCCGAAGCCGGGGCCGT	Design primers
4338134	GGCGGCCTCGGCGGCATCGGCGGCCTC	Design primers
4350302	CGG-GGG-TTG-CGG-CGG-CGG-TTC-CGG-CGG-CGG-CTG-CGG	Design primers
4362328	GCCACCAAGCCCACCAAGGGCACCAAG	Design primers
4365387	ACCTCG-TCCTTG-TCCTTG-TCCTTG-TCCTTG-TCCTTG	Design primers
4368887	CCTCTCCATCTCCCTCTACCTCTC	Design primers
4415619	GCCCTGGCCGCCTTGGCCGCCCTGACC	Design primers
4415760	GCCCTGGCCGCTCTGGCCGCCTTGGCC	Design primers
4422348	CGGCCATGGCCAGGGCCACGGACA	Design primers
4434087	CTACCC-CTACCC-CTATCC-GTACCC	Design primers
4437935	AAAAGGGGAAAAGGGTTAAAGGGG	Design primers
4443975	GCGCCCTGCCGCCCTGTCGCCCTG	Design primers
4465345	GGCCCTGGGCCTGGGCCTGGCCCA	Design primers
4505770	TCTTCTCTTTTCTTCCCTCTTCTTCTCTAC	Design primers
4509460	TGTA-AGTA-AGTA-AGTA-AGTA-AGTA	Design primers
4511736	CCGGCC-TCGGCC-CCGGCC-CGGGCC	Design primers
4513866	CGCGACCCTGGCCCCGGCCCTGGCTGCGGCCCTGGC	Design primers
4525501	GCCCAG-GCCCAG-GCCAAG-TCCCAG	Design primers
4539513	CCCTGG-CCCTGT-GCCTGG-GCCTGG-CCCTGC	Design primers
4550387	CTCGGCCACGGCCTCGGCCACGGC	Design primers
4598944	GGTGA-GGCGA-GGTGA-GGTGA-GGTGA	Design primers
4620365	CCCCGGCCGAGGCCGCCCCGGCAAAGACCGCGCCCGTCGAGGCCG	Design primers
4631647	CTGGGCCTGGGACTCGGCCAGGGC	Design primers
4631982	CTGCGGCGGCGGCTGCCGTTGCGG	Design primers
4705032	GCAGCCAGACGCAGCCAGCGCCAGTCAGAC	Design primers
4760995	CCAGGCCGGGCAGGCCGGCCACGCCGG	Design primers
4765339	GCGGGTCCAGGGCAGCGCCCTGGCAGGTGCAGGACAGCGTCCTGCCGGGTCCAGGGCAGCGCCCTG	Design primers
4767647	CGGCGCCATGGGCGCCATCGGCACCAT	Design primers
4792595	CGGCCACGGCGGCCATGGCGGCCAGGG	Design primers
4794050	CAGGCC-CTGGCC-CTGGCC-GAGGCC	Design primers
4849379	GCCACGGCCAGGGCCACGGCCCCG	Design primers
4886709	CGGCCAGGGCGGCAAGGGCGGCCCGGG	Design primers
4913463	CCGCCGCCGCCATCGCCGCCGACG	Design primers
4931965	CGCGCTGGCCGCCCTGGCCGCCCTGGCCGCGCTGAC	Design primers
4963479	GCCGTGGCCATGGCCGCGGCCGAG	Design primers
4969494	GGCCAGCCCGGCCAGGTCCCGGCCGGCCAGGGCCTGTTCGGCCAG	Design primers
4977983	TCTTCG-TCTTCG-TCTTTG-TCTCCG-TCTTCT	Design primers
4993882	CGGCCACGGGCACGGCCACGGCCA	Design primers
5033209	GCCAGGGCAGGCCTGGCCCGGCCCG	Design primers
5038031	CCCTATCCGTATCCCTACCCGTAT	Design primers
5038118	GGTCCG-GGGCCG-GGGCCG-CGTCCG	Design primers
5044590	TCGTCGGCGTCGTCCTCGTCGTCG	Design primers
5057707	AGGCCGAGGTCGCGGCCGAGGCCG	Design primers
5059857	GCCCTGGCCGCCCGGGCCGCCCTGGCC	Design primers
5061887	GTGGCCGTGCCCGTGACCTTGGCC	Design primers
5083467	GCCCGGGCCGGCCGGGCCAGGGCCG	Design primers
5113847	CGGGC-CGGGC-CTGGC-CGGCC-CGGGC	Design primers
5114069	GGC-CGA-CGC-CGA-CGC-GGC-CGC-CGC-CGA-AGC-CGC-CGC-CGC-CGC-CGC	Design primers
5120602	AGGCAAG-AGGGAAG-AGGGAAG-AGGGAAG-AGGGAAG	Design primers
5149761	TGGCCGTGGACGCGGCCGTGGCCG	Design primers
5199037	GCCTTG-GCCCTG-GCCCTG-GCCCTG	Design primers
5200677	GTCGGCCAGGGCGGCCAGTTCGGCCAG	Design primers
5215665	CTGGCC-GTGGCC-GTGGCC-GTGGCC	Design primers
5233311	GGCCTTGACCTTGGCCATGTCCTT	Design primers
5239108	GAAGAGATGAGAAGAGGAGAGAGGA	Design primers
5241881	CGGCCTTGTCGGGCTTGTCGGCCTTGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

20543

CTGGCCCGGGCCATGGCCCTGGACCCGGCC