Microsatellites /Tandem Repeats database

Genome: Lactobacillus plantarum JDM1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
39310AACGTGGTA-CACGTGGTA-CACGTGGTADesign primers
196251TACGAG-CAGTAG-CAGTAG-CAGTAG-CAGTAG-CAGTAG-CAGTAG-CAGTAG-CAGTAGDesign primers
198450GGTCGAACCAAGTGAACCGAGCGAACCAAGCGAACCGAGCGAACCAAGCGAACCDesign primers
198505AGCGAACCGAGTGAACCGAGTGAACCGDesign primers
447154AAATTAAGTTGAATTAAATTAACTTDesign primers
527506TATATATATTTATATATATATATTDesign primers
530360ATGATTTTAAACACGATTTTAAGCAGGATTTTAAAADesign primers
565899TGAACT-TGAACT-GGAACT-TGAGCTDesign primers
1035948AGGTT-AGGTT-AGGTA-AGGAT-AGGTT-AGGTA-AGGTTDesign primers
1061263TAAGGGTGATAAAGGTGACAAGGGTGADesign primers
1090200AATTGT-TATTGT-TATTGT-TATTGTDesign primers
1133216TAAGAATTATAAGAATGATAAGAACTADesign primers
1152074AATGTTGAAGAATTTTTGAAGAAATCTTCAAGADesign primers
1185789GACGGCGACAGTGATTCGGATAGCGACAGTGATTCGGACTCTGACAGTGATTCGDesign primers
1185873GACTCGGATTCTGATAGT-GATTCGGATTCTGATAGT-GATTCGGATTCCGACAGT-GACTCGGATTCTGATAGTDesign primers
1185969GATTCCGACAGTGATTCGGACTCTGACAGTGATTCGGATTCCGATAGCGACTCGDesign primers
1186358CGATTCAGACTCGGACAGCGATTCAGATTCCGACAGTGATTCGGACTCCGACAGDesign primers
1186509GATTCGGATTCAGACAGTGATTCGGACTCGGACAGCGACTCGGATTCGGATAGTGATTCCGACTCCGACAGTGATTCTGATTCTGATAGTDesign primers
1186608TCCGACTCGGACAGCGATTCAGACTCAGACAGTGATTCCGACTCGGACAGCGACTCCGATTCTGACAGTGATTCCGACTCGGATAGTGACDesign primers
1186704TCTGACAGTGATTCCGATTCGGACTCGGACAGCGATTCCGATTCTGACTCCGACAGTGACTCAGACTCGGACDesign primers
1186779GACTCCGATTCTGACAGCGATTCGGATTCTGACAGTGATTCCGACTCTGATAGCDesign primers
1186953GATTCGGACAGCGATTCGGACTCGGACAGCGATTCGGACTCGGATAGTGATTCGGATTCCGACAGTGACTCGDesign primers
1187049GACAGTGACTCGGACTCAGATAGTGATTCCGACTCAGACAGCGACTCGGATTCCDesign primers
1187113CGGATTCCGACAGCGACTCGGATTCCGACAGTGACGCTGACTCAGACAGCGACTCAGGTTCCGACAACGACTDesign primers
1217230TAATGGGGCATATTGGGGCCGAATGGTGCADesign primers
1408726GTGATA-GTGATA-ATGATA-TTGATADesign primers
1440939GATGAAGACGAAGATGAAGCTGAADesign primers
2027955TTGTTGATGTTGTTGTTGTTGTTTDesign primers
2205258CCTGGTTCGCCTGGTTTGCCTGGTTGGDesign primers
2205366CCTGGTTCACCTGGTTTACTTGGTTCADesign primers
2396920CTGGTATTT-CAGGGGTTT-CAGGGGTTT-CAGGGGTTT-CAGGGGTTT-CAGGGGTTTDesign primers
2638002TACTGCCACTAC-TGATGCCACTAC-TGATGCCACTAC-TGATGCCACTACDesign primers
2695837CACCTCAACCGAGCCCGGCACCACAACCAAACCCGGCACCACAACCGAGCCCGGDesign primers
2706166GACTCAGATTCAGAATCAGATTCAGAATCAGACTCTDesign primers
3094968TAGAATCAATTAGAAATAATTAGAATAATTDesign primers
3180195TTTTTC-TTTTTC-TTGTTC-TTTTTCDesign primers

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