Microsatellites /Tandem Repeats database

Genome: Escherichia coli O157:H7 str. TW14359

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
197CAT-TAG-CAC-CAC-CAT-TAC-CAC-CAC-CAT-CAC-CAC-CACDesign primers
53261CTGGCGGTGGCGCTGTCGATGGCGDesign primers
64009ATGCTAACCTGGACGGTGCTACCCTGGACGGTGCTACCGTGGACGDesign primers
78411GCAGCAACAGCAGCAGCGCCAGCADesign primers
168897TCACCC-TCACCC-TAACCC-TCTCCCDesign primers
252291TTCTGA-CTCTGA-CTCTGA-CTCTGADesign primers
273972AGAAAA-GGTGAA-GGTGAA-GGTGAA-GGTGAA-GGTGAA-GGTGAA-GGTGAA-GGTGAADesign primers
492517GGAAAAAATTGCGGAAGAAATTGCGAAAAAAACTGCGGAAATAATTGCDesign primers
866338AAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAGAAAGCTGCAGCCGACDesign primers
866431GCAGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAADesign primers
866504AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
866550TGCAAAAGCAGCAGCTGAAAAAGCCGCTGCAGCAAAAGCTGCCGCDesign primers
904004TAATTTTATTTTATTAAATTTAAATDesign primers
1145255GCGTCGCGAGCGTGGCGAACGTCGCGADesign primers
1175265GTAAGGGGCTTCGAAGGGGCTTTTAAGGGGCTTDesign primers
1241821ATTGGGATTGTGATTGGCATTGCGDesign primers
1356625CGGTGAGGGTGACGGTGACGATGADesign primers
1464604TTGCAA-ATGCAA-ATGCAA-ATGCAA-ATGCAADesign primers
1488378TGGGACGGGATGGGTTGGTATGGGADesign primers
1537244ACAACGTGCAACAATGAGCAACAATGTGGADesign primers
1723968TAATGATTTTTAATGTGTTTTTGTGATTTTDesign primers
1963706TATTTTTAGTTTTATTTTTATTGTDesign primers
1965401AATAGCAG-AACAGCAG-AACAGCAG-AACAGCAG-AACAGCAGDesign primers
2104877TTCTGT-ATCTGT-ATCTTT-ATCTGT-ATCTTT-ATCTGTDesign primers
2105200CACGTAGTGACACGCCGTGACATGTCGTGADesign primers
2117845TGGGCCTGC-CGGGCCTGC-CGGGCCTGCDesign primers
2407858CGGGATCGGCATCGGCATCGGGTTDesign primers
2597331ACAAAACAACACACAAAAAAACCAADesign primers
2611815CACGTAGTGACACGCCGTGACATGTCGTGADesign primers
2618543CCTGAAAATATTCCAAGAAAATATTCCAAGAAAATATTCDesign primers
2857796ATCAAG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACGDesign primers
3041984TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
3219614TCATGATCGATTTCATGATCGGTTTTATGATCAATTTCATGATCGATTDesign primers
3250097CAGTTCAAC-CAGTTCAAC-CAGTTCAGC-CAGTTCAGCDesign primers
3549369CACAAC-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAG-AAATAGDesign primers
3550807TTATTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTGDesign primers
3560234TCGGGTCTGGTTTCGGATCCGGTTTTGGGTCTGGTTDesign primers
3560284GGATTTGGGTTG-GGATTTGGGTTG-GGATCCGGGTTGDesign primers
3724281GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3951563CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
4275986TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
4402266TGCTGGCGCTGGTGCTGGTGCTTGDesign primers
4491605ATAGCCGCC-AGCACCGCC-AGCACCGCC-AGCACCGCC-AGCACCGCC-AGCACCGCCDesign primers
4587017CCCTCACCCTAACCCTCTCCCTCADesign primers
4659918GCAGTTTCAGTTGCACTTGCAGCTDesign primers
4840695CAGCTT-GCGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTG-CAGGTGDesign primers
4959331AATGCCAATGGCGATGCCAATTCCDesign primers
5198367CTCAATGAT-TTCAATGAT-TTCAATGATDesign primers
5258341GGCGGCATG-GGTGGCATG-GGTGGCATG-GGCGGCATGDesign primers
5362772ATTAAATAATCATCAGAAGTTAAATAATCTACAGAAGTTAAATAATCTACAGAADesign primers
5362843AGTTAAATAATATACAGGAGTTAAATAATTCGCAGGAGTTAAATAATTCGCAGGDesign primers
5454085TCGGTACTGTTCTTGGCTTGTTTATCGGTACTGTCATTGACCTGTTTATCGATATTGTCATTGGCTTGTTTATCGGTACTGTCATTGGCTTGTTGCDesign primers
5455767TATATCTTTATCTTTATCTTTATCDesign primers
5506989AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers

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