Microsatellites /Tandem Repeats database

Genome: Clostridium difficile CD196

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
17383TATAAAAAATTAAAGAAAATTCTAAAAAAADesign primers
48413TAAGGATAAAGATAAGGATAAAGADesign primers
68028ATGGTAATTGTATTGGTAATGGCADesign primers
78537AATAATAAACTAATAAAATATTAADesign primers
110569GAAACGATAGAAGAGGAAATGACAGAAGAGGAAATGATAACAGAGDesign primers
165213ATGAATA-GATTATA-GATTATA-GATTATA-GATTATA-GATTATA-GATTATA-GATTATA-GATTATADesign primers
215230AAATTAATTAAAAGTTATTATAATAAATTADesign primers
227437TTAAAAATAAAATTAAATTTAAAADesign primers
272708TATTTATAGTTATAATTATACTTADesign primers
338708TAAAAATTATAAATTAATAATAAAAAATDesign primers
415702TATAGATAAAGATATACATATAGTDesign primers
427341TAAGATAAAAAATGATAAAATAAGAAAATADesign primers
463339TTTAAATATACTTAAAAATATATTAATATADesign primers
506138TACTTATATTTAATTTTATTTACTGATAATDesign primers
532130AACCTTAATCTTAATCTTATCCTTDesign primers
555760TAAGTAAGATGATAACAAATGAGATGATAATAAGTAAATTGATATDesign primers
584054TTTTTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAA-AGAGTAAADesign primers
584179TAGATTACTAAATTACTAGATTATDesign primers
588624ATTTAATATTTGTTTAATACTTATTAAATATTTDesign primers
594791ATTATTTTATATAATAGTATAATATDesign primers
596453AATTATAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGT-AAAAGTAAATAGGATGTDesign primers
615844TTATATTG-GTATATTG-GTATATTG-GTATATTGDesign primers
635957TATCTAGTTTATATATCTAGCTTATGTATGTAATTTATATATGTAGTTTATADesign primers
644295ATACTGCCTTGCATATCGCTAATAGTACCTTGCATATCGCTAATAGTACCTTGCATATAGTTADesign primers
660660AGTACTTAAGTATTTAAGTACTAADesign primers
670834ATATTAAATATTAGATAATAAATATTTADesign primers
677959TTTTAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAA-GAGCAADesign primers
693828ATAATCTAAAT-ATAATCTAAAT-ATAGTGTAAATDesign primers
693885GATTAAGTATGAATTAAGCATGGATTAAATATADesign primers
708549AAATAATAAAAAATATTAATAAACAAAAAADesign primers
743852AAAATAAATTAAAACAATATAAAAADesign primers
749566TGAAGATGCAGATGAAGTTGAAGGDesign primers
755039CTTTAAGTGATAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTT-AATTAAGTGGTAGATATTTDesign primers
757274ATGTATTGATTAAGTATTTATTAAGTATTGAATDesign primers
757913CAATTAGCAAAGAATTAGCAATCAATGAACAAADesign primers
779904AA-TG-AT-AT-AT-AA-AT-AC-AA-AT-AA-TG-TA-TA-AA-TA-TA-AA-TG-AT-GT-AT-AA-AT-AT-ADesign primers
782937ATGGCCTCAAGTATTTCT-ATAGATTCAAGTATTTCT-ATAGATTCAAGTATTTCT-ATAGATTCAAGTATTTCTDesign primers
783379TAAACTTAAATGAAATTAAACAAACTTTAADesign primers
793462AATAATTTGTATAAGAATACATTAGTAATTTGTATAAGAATATATTAAGAATTTGTATAGGAGCACATTDesign primers
795064AGAGTTTAAAAGAGTTTAACAGAGTGTATADesign primers
973477ATAACAAAACATGATAAAACATAATAAAACDesign primers
1066113ATAAAA-ATAAAA-ATACAA-ATAATADesign primers
1073573ATTTGGTGGATTTAGTGGTTTTGGTGGDesign primers
1097963ATTGTGTG-TTTGTGTG-TTTGTGTGDesign primers
1098084TTTTTATATATTACTTATATATTATTTATATTTDesign primers
1114576GA-GA-AA-AA-GT-GA-AA-AA-GA-GA-AA-AADesign primers
1141576TGTAATCCATGTAACCCATGTAATCCADesign primers
1173423ATAATAAAATTTAATATAATATAAADesign primers
1178771TTTATATACAATTATATAAATTTATAAAAADesign primers
1180661ACTTCTTTTTCTTCTTTTTCTTCTTTTDesign primers
1220267AAAGA-AAAGA-CAAGA-AGAGA-AAAAADesign primers
1233234AAAAAACGTAAAAAAATTTATAAAAATGTADesign primers
1306558AGAAGAAGATGAAGAATATGAAGADesign primers
1321689TTTAATTTATTTAATTTTATTAATTTADesign primers
1328051AAGAAAATAATAAAGAAGATAAAAAAGAAAATAGTADesign primers
1429423AAAAAAATAAAAGAAAAAGAAAAAGDesign primers
1523641ACTTTATAATTAAACAACTTGTAATTAAACAACTTGTAATTAAACAACTTATAATTAAATDesign primers
1529517AAAATAAGAATAATCAAAATACAAACAATCAAAATCCAAATAATCDesign primers
1551966ATTTTTTTATTATTTTATTTTTCTDesign primers
1565353AAATTATTTAAAATATTTAAATTAATTDesign primers
1609360GCAATTTATTATTTTTTAGGTAATTTATTACTTTTTAGGTATTCTATTATTTTTTAGDesign primers
1616490AATATAAAGATAAAAATAATTATADesign primers
1631060TTTGTAATATTTTTGAATATTTTCTAATTTDesign primers
1647596TAAAAAAATCAAAAAATAAAATAADesign primers
1760307ATTAAAAAAA-CATAAAAAAA-CATAAAAAAADesign primers
1779898GAATTAAAAAGAAATATAAAGAATTATATADesign primers
1790014TTGTATTATTATATTATTGTATTADesign primers
1810743TATAAAACAACTTAAAACAATATAGTACAADesign primers
1810860AAAGTATGTAAAATCTATGTAAAAAGTAAGAAADesign primers
1811899TGGTGAAGGTGATGGAGATGATGADesign primers
1813210GCTATAGCAATAGGTATAGCAATADesign primers
1968013ATATTAAAATATTATAATATTACADesign primers
1972484ATTATA-ATTATA-AATATA-ATTTTADesign primers
1991174TAAAAATAACAATTATAATATATAAATAGAAAGTATAATATATAAATAGCAAGTATAATADesign primers
1995497ATATA-ATATA-ATGTA-ATAAA-ATATADesign primers
2048009ATTGTTGTTGCAATGATTGTGGTTGTAAAGATTGTTGCTGTAATTDesign primers
2089415GAAATATTTTAAAATATATTGAGAAATTTTDesign primers
2143881TTTTTTAATTTTTAAATTTTTTAADesign primers
2197613ATTAAATAAAATCTAATAAAATTAACTATADesign primers
2220058TATATTAATAATTATTAATATATCTCAATADesign primers
2231574TT-AT-CT-AT-AT-CT-TT-TT-CT-TT-AT-TTDesign primers
2233987TTATAAGTTTTCATAAGTATTTACATGTTTDesign primers
2256412TATTTTTTTAAATTCTTTTAAATTTTTTTTDesign primers
2270891TAATTTTCTCATTTATTTTCTCCTAAATTTTTTCATDesign primers
2280371CTTATTGTTTTTTATTTTTTATTATTGTTTDesign primers
2396307TATATTTAGATTTAAATTTACATTDesign primers
2417287AA-AT-AT-AT-AA-AT-AT-AG-AA-AT-AA-ATDesign primers
2465300CCTCATAAAATCCTTATTTTAATAAAATCCTTATTTTAATAAAATCCTTATDesign primers
2503379ATACATAATAAAACATAACAAAACATTATAAAACATAACADesign primers
2520037TTTTGATTTTTATTTTAATTTTTADesign primers
2563514GCTTTTGCTTCTTCTTTTTCTTTTDesign primers
2595241ATATAGTATAATACATTATATTATADesign primers
2598814TTC-TTA-TTG-TTA-CTC-TTA-TTT-TTA-TTA-TTA-TTG-TTADesign primers
2685955TTATTTTTATTATTCTTTTTATTTDesign primers
2712683TTTATTGTATTTTCTTTTAATTTATTGTATDesign primers
2771586ATTCTATTTTCTTCTAATTTATTCTTATTTDesign primers
2792560AATACAAAATAATAACAAATTATACAAAACDesign primers
2808927CTCTTC-CTCTTC-TTCTTC-TTCTTCDesign primers
2860449TT-TA-TT-TT-TA-TA-TT-TT-TA-TA-TT-TTDesign primers
2865578TATTTTTATTTGTATCTTGATTTTDesign primers
2865843ATTATTATTTTCATTATTATTGTTTTGATTGTTATTACTATCATTATTTTCATTTCCATTDesign primers
2890865CTTTTTATTAATTTTTTTTACTTTTTCTTTDesign primers
2891435TT-TT-TT-AT-TT-CT-TT-TT-TT-GT-AT-TT-TDesign primers
2914185TAAAATATATCAAAATATAATGATATATATDesign primers
2931148TACTAATAAACCTGATAACAATAAACCAGAGTCTAATAAACCTGADesign primers
3000234ATAATATTATTTAATCTAATTTAATDesign primers
3047674CTTTTTTGTAA-TCTTTTTGTAA-TCTTTTTGTAADesign primers
3065036AACTTATTTCTATCTTATTTTTGACTTATTTCTDesign primers
3068627AAATTT-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGCDesign primers
3074406TTTATCTTCATCTTTATCTGTATCDesign primers
3087592TGATTATTTTCTATTTATTTTCTCTTTATTTTCDesign primers
3094737TCTTTATCATTATTTTTATCTTGADesign primers
3094850ATTTTTATTTTCATCTTTATTATTDesign primers
3165556TGTTTTTAGTTGTATTTAATTGTTTTTATTDesign primers
3219179TTTTTTTATTTGTTTTTTATTGTTTDesign primers
3220400TTACCTTTACCAATACCTTTATCTDesign primers
3298123TTCTTTTGTTTTCATTTGTTTTCCTDesign primers
3376812TTATAATTAAAATTACAAATATAADesign primers
3416329TTTTATTTAAGCTTTTATATTTTTTAAACTTTTATATTTTTTAAACTTTTADesign primers
3420025ATTTATTTTAATTTATTTTAATTGADesign primers
3422826AA-AA-TA-TT-AA-AT-AG-TA-TT-AA-AA-AA-GA-TA-AADesign primers
3423532TTTTATGATATTTAATAATATTTTATGTTADesign primers
3448556TTCTTATTTAATACAAATTTCTTATTTAACATAGATTTCTTGTTTAATATAAATDesign primers
3473612AAATTTGAATTTAAAATTAAATCTDesign primers
3499059ATAATTATCATTATATTTAAAATTDesign primers
3511421ATAAATT-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATC-TTCTATCDesign primers
3528719ATTATTATTATTTATATTGTTATTGTCTATCTTGTTATTATTTATDesign primers
3548414TATTGATTTTTTATTTCTTTATATTTTATTTATTAAATTTTTATTDesign primers
3548469TTTAATTTTATTTGGTTTTATTTAATTTTATTTAGTTTTTDesign primers
3578970TTATTTTAGTTTATATTAATTTATTDesign primers
3609301GTTGGACCT-GTTGGACCT-ATTGGACCTDesign primers
3609589GTTGGGCCT-GTTGGGCCT-GTTGGACCTDesign primers
3609779TTGCTCCCGTTGCTCCTGTTGCTCCTGDesign primers
3609914TTGCTCCCGTTGCTCCTGTTGCTCCTGDesign primers
3610004TTGCTCCCGTTGCTCCTGTTGCTCCTGDesign primers
3623885GCT-GCT-TCT-TCT-ACT-GTT-TCT-TCT-ACT-ACT-TCT-TCTDesign primers
3629787TT-TA-TT-TA-AT-TT-TT-TT-AT-AT-TT-TT-TDesign primers
3656823TGAATCTCCTGAATCACCTGAACCTCCDesign primers
3665526TACTGCTACTGGCACTGCCACTGCDesign primers
3689386ATATTATTATTAACATTAATTTTADesign primers
3726526TATTATTTTATATTATATAATAGTATTTTATAATADesign primers
3727173ACCTGTTGGGCCTGTTGGACCTGTTGCDesign primers
3727344TCCTGTTGCTCCGGTTGCTCCTGTTGGDesign primers
3727549GCTCCTGTTGCTCCGGTTGCTCCAGTTDesign primers
3727626TGCTCCTGTTGCCCCTGTTGCTCCTGTDesign primers
3727770TGCTCCTGTTGCCCCTGTTACTCCTGTDesign primers
3727801CCTGTTGCTCCGGTTGCTCCGGTTGCTDesign primers
3727910TTCCTGTTG-CTCCTGTTG-CTCCTGTTGDesign primers
3728007TGCCCCTGTTGCTCCTGTTGCTCCTGTDesign primers
3728190TCCTGTTGCCCCTGTTGCTCCTGTTGGDesign primers
3728277TGCTCCTGT-TGCTCCTGT-CGCTCCTGTDesign primers
3728475TGGACCTGTTGGACCCGTTGGTCCTGTDesign primers
3730147TTTATTCATT-CCTATTCATT-CCTATTCATTDesign primers
3798298TAATTTTTTTATTATTTCTTTAAAATTTTTATADesign primers
3817043TAATATTATTTAATATTCCTCAATAATATTDesign primers
3916081CTTCTTCTTCTTCCTCTTCTTCCTDesign primers
3916372ACTCTTCATATTCTTCATATTCTTCATDesign primers
3998835ATAAATATGAATTTAAATAGAAATDesign primers
4015858TAGCTATAGCAATAGATATAGCTGDesign primers

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