Microsatellites /Tandem Repeats database

Genome: Fibrobacter succinogenes subsp. succinogenes S85

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
40316AGACGAG-AGACGAG-AGACGAG-AGACGAGDesign primers
76066TCTTTCG-TCTTTCG-TCTTTCG-TCTTTCGDesign primers
116114CTCTCGT-CTCTCGT-CTCTCGT-CTCTCGTDesign primers
262566ATAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTC-TAAGTTCDesign primers
888858TAGAACT-TAGAACT-TAGAACT-TAGAACTDesign primers
1200612AAGGATACAGAAAAAGATACAGAAAAGGTTACAGAADesign primers
1471304AGCTACCCAATCCTACCCAAT-TCCTACCCAATCCTACCCAAT-TCCTACCCAATCCTACCCAATDesign primers
1858246TAGAACT-TAGAACT-TAGAACT-TAGAACTDesign primers
1877649TTCTAAG-TTCTAAG-TTCTAAG-TTCTAAGDesign primers
2000538CTAAGTT-CTAAGTT-CTAAGTT-CTAAGTTDesign primers
2230892TCTCTCG-TCTCTCG-TCTCTCG-TCTCTCGDesign primers
2241197TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAACDesign primers
2547004GTTTTCTGTAAC-CTTTTCTGTAAC-CTTTTCTGTAACDesign primers
2665894TTTAGAG-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAADesign primers
2689162GGCGGCCGGCTTCTTAGCAGCGGCCGGCTTCTTAGCAGCGGCCGGCTTCTTAGCGGCGGCGGGCTTCTTAGCGGCAGCCGGCTTCTTAGCDesign primers
2772122ATTTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAGDesign primers
2799312GTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAADesign primers
2805176TTAGAGC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAACDesign primers
2954069TTCTAAG-TTCTAAG-TTCTAAG-TTCTAAGDesign primers
2967215AAGTAGG-AAGTAGG-AAGTAGG-AAGTAGGDesign primers
2997031TTAGAAC-TTAGAAC-TTAGAGC-TTAGAAC-TTAGAGC-TTAGAACDesign primers
3073533CTTTCGT-CTTTCGT-CTTTCGT-CTTTCGTDesign primers
3083500TCTTTCG-TCTTTCG-TCTTTCG-TCTTTCGDesign primers
3242890CTTTCGT-CTTTCGT-CTTTCGT-CTTTCGTDesign primers
3271113TCTCTCG-TCTCTCG-TCTCTCG-TCTCTCGDesign primers
3272461TCTTTCG-TCTTTCG-TCTTTCG-TCTTTCGDesign primers
3358528TTAGAGC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAACDesign primers
3398465TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAACDesign primers
3401666ATTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAADesign primers
3458607TTAGAAC-TTAGAAC-TTAGAAC-TTAGAACDesign primers
3493811CGCATTTCAC-CGCATTTCAC-CGAATTTCACDesign primers
3602831ACGGTT-ACGGTT-ACGGTT-ACGGTT-ACGGTTDesign primers

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