Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Fibrobacter succinogenes subsp. succinogenes S85

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
2605	TAGACGAAAGACGAGAGACGAAAGACGA	Design primers
18053	TAGACGAAAGACGAGAGACGAAAGACGA	Design primers
40315	AAGACGA-GAGACGA-GAGACGA-GAGACGA	Design primers
43539	AGACGAGAGGCGAGAGACGAGAGACGAG	Design primers
53730	TTCTAAGCTCTAAGTTCTAAGCTCTAAG	Design primers
61814	TCTTTCGTCTATCGTCTTTCGTCTATCG	Design primers
68737	CCTTCTTGCCCTTCTTACCCTTCTTGC	Design primers
76065	TTCTTTC-GTCTTTC-GTCTTTC-GTCTTTC	Design primers
103405	GCCCAAGCGCCCAACCGCCCACGC	Design primers
116113	CCTCTCG-TCTCTCG-TCTCTCG-TCTCTCG	Design primers
128975	GGCAGTAGGAAGTAGACAGTAGGCAGTA	Design primers
139998	GTCTCTCGTCTTTCGTCTCTCGTCTCTC	Design primers
146311	ACGATG-ACGATG-ATGATG-ACGATC	Design primers
208299	TTCTAAGATCTAAGTTCTAAGATCTAAGTTCTAAA	Design primers
233441	TTTCTTTTCAACCTTCTTCTTTTCAACCGTTTTCTTTGCGACTTT	Design primers
237219	AAAGACGAGAGACGAAAGACGAGAGACG	Design primers
262564	AGATAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGT-TCTAAGT	Design primers
301631	TCTCTCGTCTTTCGTCTCTAGTCTCTCA	Design primers
313576	CAGACGA-GAGACGA-GAGACGA-AAGACGA	Design primers
326625	TTCGCCAAATTTCGCAAAAATTCGCAAATT	Design primers
369495	AGTGGTTAGTGATTAGTAGTTAGTGATT	Design primers
383422	TTCTAAG-TTCTAAG-CTCTAAG-TTCTAAG	Design primers
402867	CTCGTCTTTCGTCTCTAGTCTCTCGTCT	Design primers
418931	CTAACCA-CTAACCA-CCAACCA-CAAACCA	Design primers
429649	AGACGAG-AGACGAG-AGAGGAG-AGACGAG	Design primers
496046	CTAACCACTAATCACTAACCACTACCCA	Design primers
524631	CTCGTCTCTCGTCACTCATCTCTCGTCT	Design primers
572733	GTTAGTGATTAGTGGTTGGTGGTTAGTA	Design primers
605529	TCTCTCG-TCTCTCG-TCCCTCG-TCTCTCG	Design primers
613817	ACACCCCAAACATCCCAAACACCCTAA	Design primers
624920	AAGGCTGAACTCGAAGCCAAGAAGGCCGAACGTGAAGCTAAGAAGGCTGAAGAAGAAGCAAAG	Design primers
683706	ATAGACGAGAGACGAAAGACGAAAGACG	Design primers
686452	CAAGAGA-CGAGAGA-CGAGAGA-CGAGAGA	Design primers
717971	CTGCCTACTGTCTACTTCCTACTGCCTA	Design primers
723205	TTAGAACTTAGAGCTTAGAACTTAGAAC	Design primers
747789	AGTTATTAGTTGTTAGTTACTAGTTAATAGTCATTAGTTACTAGTTATT	Design primers
825750	TAGACGAAAGACGAGAGACGAAAGACGA	Design primers
830975	TCGTCTCTCGTCTTTAGTCTCTCGTCTA	Design primers
860304	TTCTAAGCTCTAAGTTCTAAGTTCTAAGTTCTAAA	Design primers
866810	TCTTTCG-TCTCTCG-TCTCTCG-TCTTTCG	Design primers
884421	CTCTAAGTTCTAAGATCTAAGTTCTAAG	Design primers
888857	ATAGAAC-TTAGAAC-TTAGAAC-TTAGAAC	Design primers
897305	TTAGTTACTAGTTAATAGTTATTAGTTA	Design primers
919355	ATAGACG-AAAGACG-AAAGACG-AGAGACG	Design primers
945951	CTAGTAA-CTAGTAA-CTATTAA-CTAGTAA	Design primers
949915	CCGCAACCGCAGCCACAACCGCAA	Design primers
1041594	ATAGACG-AAAGACG-AAAGACG-AAAGACG	Design primers
1041724	ACTAGTA-ACTAGTA-TCTAGTA-ACTATTA	Design primers
1044872	CTAAGTTCTAAGATCTAAGCTCTAAGTTCTAAATT	Design primers
1044916	TTCTAAGCTCTAAGTTCTAAGTTCTAAGTTCTAAT	Design primers
1063843	TCTTCACAGAATCAGTCTTGACGGAATCCGTCTTAGCGGAATCAG	Design primers
1174073	AGTAGGA-AGTAGGA-AGTGGGA-AGTAGGA	Design primers
1200611	TAAGGATACAGAAAAAGATACAGAAAAGGTTACAGA	Design primers
1247062	CATCTGCATCGGCATCAGCATCTA	Design primers
1362549	TTTTTACAGTCGGATTTACAGTCGCCTTTACAGTCGGGTTTACAGTCG	Design primers
1375076	TAGACGA-GAGACGA-AAGACGA-AAGACGA	Design primers
1403545	TTCTAAG-TTCTAAG-CTCTAAG-TTCTAAG	Design primers
1424095	TAGACGAGAGACGAAAGACGAGAGACGA	Design primers
1471301	GAAAGCTACCCAATCCTACCCAATTCCTACCCAATCCTACCCAATTCCTACCCAATCCTACCC	Design primers
1486855	TCTCTCG-TCTCTCG-TCTCTAG-TCTCTAG	Design primers
1560873	ATTAGTCATTGGTCATTAGTTGTTAGTCATTAGTT	Design primers
1650795	AGTGGTT-GGTGGTT-AGTGGTT-AGTGGTT	Design primers
1650956	CGAGAGA-CGAGAGA-CGAAAGA-CGAGAGA	Design primers
1679475	ACGCAAACGCAGACGAAACCGCAA	Design primers
1723461	ATTGGTCATTAGTCATTGGTTATTTGTCAATGGTCATTGGTC	Design primers
1748816	ACTAACCACCAACCACTAACCACTAATC	Design primers
1803639	CTAAGTTCTAAGATCTAAGTTCTAAGTT	Design primers
1814422	TAGAACT-TAGAGCT-TAGAGCT-TAGAACT	Design primers
1858245	ATAGAAC-TTAGAAC-TTAGAAC-TTAGAAC	Design primers
1858301	TCTCGTCTCCCGTCTCTCGTCTCTCGCC	Design primers
1877640	AATTCTA-AATTCTA-AGTTCTA-AGTTCTA-AGTTCTA-AGTTCTA	Design primers
1929389	CTAATGACCAATGACTATTGACTAATAA	Design primers
1953181	TCACTCGTCTCTCGTCACTCGTCTCTCG	Design primers
1955827	TGAAAATTGCTTAAATTTGCTTAAAATCGC	Design primers
2000537	ACTAAGT-TCTAAGT-TCTAAGT-TCTAAGT	Design primers
2028989	TCTCTCG-TCTCTCG-CCTCTCG-TCTCTCG	Design primers
2035962	GAGACGA-AAGACGA-AAGACGA-AAGACGA	Design primers
2112580	TAACTCTTGAGTAAATAACTTTAGAGTTAATAACTTTGGAGTAAA	Design primers
2139079	ACAGACGAAAGACGAGAGACGAAAGACG	Design primers
2230891	ATCTCTC-GTCTCTC-GTCTCTC-GTCTCTC	Design primers
2241196	TTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA	Design primers
2253555	TTAGTTGGTAGAACTTAGTTGGCAGAGCTTAGTTGGCAGAAC	Design primers
2324745	CTAACCA-CTAACCA-CCAACCA-CTAACCA	Design primers
2341518	TTAGAACTTAGAGCTTAGATCTTAGAACTTAGAAA	Design primers
2398724	GAAAAAAATTAAAAAAATTTGAAAAAAATG	Design primers
2440693	ACTTCCT-ACTTCCG-GCTTCCT-ACTTCCT-ACTTCCT	Design primers
2491436	AGAACTTAGAGCTTAGAACTTAGAGCTT	Design primers
2508066	AGTTACTAGTTAATAGTTAGTAGTTACT	Design primers
2544269	TAGACGAAAGACGAGAGACGAAAGACGA	Design primers
2547003	GGTTTTCTGTAA-CCTTTTCTGTAA-CCTTTTCTGTAA	Design primers
2620525	AATAGTT-ATTAGTT-ATTAGTT-ACTAGTT	Design primers
2623147	CTACTGC-CTACTGC-CAACTGC-CTACTGC	Design primers
2658242	TACTTCC-TACTTCC-GACTTCC-TACTTCC	Design primers
2665892	TGTTTAG-AGCTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAG-AACTTAG	Design primers
2666054	AACCACTAACCACCAGCCACTAACCACT	Design primers
2673085	TAGAACT-TAGAACT-TAGAGCT-TAGAACT	Design primers
2689160	TTGGCGGCCGGCTTCTTAGCAGCGGCCGGCTTCTTAGCAGCGGCCGGCTTCTTAGCGGCGGCGGGCTTCTTAGCGGCAGCCGGCTTCTTA	Design primers
2689251	CGGCAGCGGGCTTCTTAGCGGCAGCCGGCTTCTTAGCAGCGGCCGGCTTCTTAGCGGCAGCCGGCTTCTTAG	Design primers
2689324	AGCGGTCGGCTTCTTAGCGGCGGCAGGCTTCTTAGCAGCGGCCGGCTTCTTAGCGGCGGCGGGCTTCTTAGCAGCAGCGGGCTTCTTAGCAGCGGCCGGCTTCTTAGC	Design primers
2691340	ATAGACGAGAGACGAAAGACGAGAGACG	Design primers
2700086	GT-TT-TT-GT-TC-TT-GT-TT-TT-AT-TT-TT	Design primers
2722927	CTGCCTACTGTCTACTTCCTACTGCCTA	Design primers
2744302	TCTTTCG-TCTCTCG-TCTCTCG-TCTTTCG	Design primers
2772120	GAATTTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT	Design primers
2791466	TAGAACTTAGAGCTTAGAACTTAGAGCTTAGAACT	Design primers
2794133	TTTTGTTTTTTTGTTTGTTTTTGA	Design primers
2799311	TGTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA	Design primers
2805175	GTTAGAG-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA	Design primers
2825382	CTGCCGCACCTGCTCCCGCACCAGCTGCAGCACCTG	Design primers
2827997	AATTAGA-ACTTAGA-ACTTAGA-ACTTAGA	Design primers
2884814	TAAGTTCTAAGCTCTAAGTTCTAAGTTC	Design primers
2890250	TTCTAAGCTCTAAGTTCTGAGTACTAAGTTCTAAA	Design primers
2934133	TGCTAAGGTTGTTGGTACGGTTGTTGCTAAGGATGT	Design primers
2954068	TTTCTAA-GTTCTAA-GTTCTAA-GTTCTAA-GTTCTAA	Design primers
2967214	AAAGTAG-GAAGTAG-GAAGTAG-GAAGTAG	Design primers
2997030	TTTAGAA-CTTAGAA-CTTAGAG-CTTAGAA-CTTAGAG-CTTAGAA	Design primers
3045222	CTTCCTACTTCCGACTTCCTACTTCCTA	Design primers
3060159	TAGAATTTAGAACTTAGAATTTAGAAGT	Design primers
3060234	ACTATTA-ACTAATA-ACTAATA-ACTATTA-ACTATTA	Design primers
3065147	TTACTTC-CTACTTC-CTACTTC-TAACTTC	Design primers
3073532	ACTTTCG-TCTTTCG-TCTTTCG-TCTTTCG	Design primers
3083499	TTCTTTC-GTCTTTC-GTCTTTC-GTCTTTC	Design primers
3108201	ACTAATCACTAACCACTAATCACTAACC	Design primers
3142598	TTTTGCTAGATCATTTGCTAAATCCTTTGCTAGATG	Design primers
3164568	TGTCGTCTCTCGTCTTTCGTCTCTCGTCTTTCGTC	Design primers
3174388	CTCTCGT-CTCTCGT-CTCTCGT-CTCTCCT	Design primers
3190653	TTCCAGCTCCAGCGAAGAACCGCTCTCCAGCTCTAGTGAAGAACCGGTTTCTAGCTCCAGCGAAGAACCGGA	Design primers
3197618	TGTTCAAGTCCCTGTTTAAGCCCCTGTTTAAGTCCT	Design primers
3216304	TTGAAATTGAAGTTAAAACTGAAA	Design primers
3242889	CCTTTCG-TCTTTCG-TCTTTCG-TCTTTCG	Design primers
3249749	AGTTACTAGTTAGTAGTTACTAGTTACT	Design primers
3271112	ATCTCTC-GTCTCTC-GTCTCTC-GTCTCTC	Design primers
3272460	TTCTTTC-GTCTTTC-GTCTTTC-GTCTTTC	Design primers
3275941	TCTTTCGTCTCTCGTCTTTCGTCTTTCG	Design primers
3281174	AGACTAGAGAGTAGAGACGAGAGACGAG	Design primers
3306538	TATGAATATCAATAGGAATATCAA	Design primers
3346788	CTCTCGTCACTCGTCTTTCGTCTCTCGT	Design primers
3352139	CTCTAAGTTCTAAGATCTAAGCTCTAAG	Design primers
3356621	GGTAGTAGACAGTAGGCAGTAGACAGTGGTTAGTAGACAGGA	Design primers
3356690	CTAACCACCAACCACTAACCACCAACCA	Design primers
3358505	AAGTAGA-GTTTAGA-ACTTAGA-GTTTAGA-GCTTAGA-ACTTAGA-ACTTAGA-ACTTAGA-ACTTAGA	Design primers
3358756	TCTTTCG-TCTCTCG-TCTCTCG-TCTTTCG	Design primers
3361121	GCCGAA-GCCGAA-GCTGAA-GTCGAA	Design primers
3363450	CTACTGACTAATGACTATTGACTAGTGA	Design primers
3364730	TGACTAA-AGACTAA-TGACTAA-TAACTAA	Design primers
3387349	GAAGAAACTGTTGAAGAGGCTGTTGAAGAAACTGCC	Design primers
3398464	TTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA-CTTAGAA	Design primers
3401669	AGAACTTAGAACTTAGAACTTAGAACTTAGAACTTAGAACAA	Design primers
3405201	TCTTTCGTCTCTCGTCTTTCGTCTTTCG	Design primers
3431452	GAGACGAAAGACGAGAGACGAGAGACGAGAGACGC	Design primers
3431789	GAAAGACGAGAGACGAAAGACGAGAGACGAGAGAC	Design primers
3445299	TCTTTTTCTCTTTCTTGTTCATTT	Design primers
3451650	ATGACTA-ATGACCA-TTGACTA-ATGACTA-AAGACTA	Design primers
3458605	AATTAGA-ACTTAGA-ACTTAGA-ACTTAGA	Design primers
3493810	GCGCATTTCA-CCGCATTTCA-CCGAATTTCA	Design primers
3534781	ATCTAAGTTCTAAGCTCTAAGTTCTAAG	Design primers
3561355	CAGCTCCAGCTAAAGCTCCAGCGC	Design primers
3602830	CACGGT-TACGGT-TACGGT-TACGGT-TACGGT	Design primers
3614867	CTCTCGTCTTTCGTCTCTTGTCTTTCGT	Design primers
3614984	CTTTCGT-CTTTCGT-CTCTCGT-CTTTCGT	Design primers
3634787	GAAAGCTCTGCAGAAAGTTCTACAGAAAGCTCCGCT	Design primers
3675967	CTGCAACAGGAGCCGGAGCAACGGGAGCCGTTTCAACAGGAGCAG	Design primers
3682748	TTTCTTGATTTTCTTGGTTGTCTTGAT	Design primers
3724481	TAGACGAAAGACGAGAGACGAAAGACGA	Design primers
3781646	TTAGCTGGCAGAACTTAGTTGGCAGATCTTAGTTGGCAGATC	Design primers
3810272	AGAACTT-AGAACTT-AGAGCTT-AGAACTT	Design primers
3835026	TAGACGA-AAGACGA-GAGACGA-GAGACGA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

2605

TAGACGAAAGACGAGAGACGAAAGACGA