Microsatellites /Tandem Repeats database

Genome: Gardnerella vaginalis 409-05

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
94488AAAACT-AAAACT-AAAACT-AAAACTDesign primers
335306GGCTCCTGC-AGCTCCTGC-AGCTCCTGC-AGCTCCTGC-AGCTCCTGC-AGCTCCTGC-AGCTCCTGC-AGCTCCTGCDesign primers
344195TTCTGCATCTTCCGCAGC-TTCTGCATCTTCCGCAGC-TTCCGCATCTTCCGCAGCDesign primers
376381TATTAACGCAATGT-TGTTAACGCAATGT-TGTTAACGCAATGT-TGTTAACGCAATGT-TGTTAACGCAATGTDesign primers
381990CTTAGTAAGCG-TTTAGTAAGCG-TTTAGTAAGCGDesign primers
393427ATCAAGAATCAGTGCCTC-CTCAAGAATCAGTGCCTC-CTCAAGAATCAGTGCCTCDesign primers
438467GAAGTAAGTGTA-AAAGTAAGTGTA-AAAGTAAGTGTADesign primers
454167AACGAAACCAACTTAACCGAAACCAACTTAACCGAAACCAACTTADesign primers
461715CTGGTAATA-CTGGTAATA-CTGGTAATADesign primers
493378TCCTGCTTCTGT-TCCTGCTTCTGT-TCCTCCTTCTGTDesign primers
577663TGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGACDesign primers
583375AAGTATCGC-AAGTATCGC-AAGTATCGCDesign primers
846334AAATGAGT-AAATGAGT-AAATGAGTDesign primers
959126AACGAAAACGACAACAAAAACGACAACAAAAACGACDesign primers
1004452TAAATGCAGTCTAAATGCAATCTAAACGCAGTCDesign primers
1015572AGTATTAAAGAATATTAAAGAGTATTAAATDesign primers
1022543AAGACTATTAACTACTTACGC-AAGATTATTAGCTACTTACGC-AAGATTATTAGCTACTTACGC-AAGATTATTAGCTACTTACGCDesign primers
1078728TTTATTCCTC-GTTATTCCTC-GTTATTCCTCDesign primers
1081588CGCTATTTTCACTATTTTGCGCATTATTTTCACTATTTTGCGCATTATTTTCACTATTTTGCGDesign primers
1095550GACAAAGACAAGAACAAAGACAAGGAAAAAGACAAGDesign primers
1135237TCCGTCCGAA-TCCGTCCGAA-ACCGTCCGAADesign primers
1206303ATTATTTATTC-TTTATTTATTC-TTTATTTATTCDesign primers
1435249AGCAGTCTGATCATTCTTTGGAGTAGTCTGATCAGTCTTTGGAGTAGTCTGATCAGTCTTTGGDesign primers
1608287TAATTAAATATATTTAAATATAATTATATADesign primers

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