Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Gardnerella vaginalis 409-05

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
7062	ACGCCTTCGCCTTCGCCTACGCCG	Design primers
94487	AAAAAC-TAAAAC-TAAAAC-TAAAAC	Design primers
147083	ACTCTTCTTCTGAAGAGTCTTCTTCTAAAGGCTCTTCTATTGAAG	Design primers
164933	AAATAGTTAAATCTAGTTAAATCTAGTTAA	Design primers
182874	CAACTAATAAATAATTAATAAACAACCAATAAC	Design primers
186814	GCAGAGAAGTCTGCAAATAAGTCTGCAAATAAGTCT	Design primers
186859	TCTGCAAATAAGTCTACAAATCAGTCTGCAGATAAG	Design primers
203777	AAATGTTTCACGAATTGTTTCACGTAATGATTCACG	Design primers
231198	AAAAGAAATAAAAGAAATAAAAGGAAT	Design primers
245686	GAATAAAGCTAATAAAGCGAATAAAGG	Design primers
249399	TTCGCAGAAAATTGCGTAGAAAATCGCGCAGAAAAT	Design primers
256122	GGCTCTACGAATCTCGGTACTACAAATCTCGACTCTAATAATCTC	Design primers
274168	TAGCGATGCTAAGAATGGTGACGCTAAGAATGGCGATGCTAAGAA	Design primers
304439	AAGCTAAGCCTCAAGCTAAGCCGCAGGCTAAACCTC	Design primers
310120	TTGCGCTTAGTTGCTTTTAGTTGCGATTAT	Design primers
335301	GCTGAGGCT-CCTGCAGCT-CCTGCAGCT-CCTGCAGCT-CCTGCAGCT-CCTGCAGCT-CCTGCAGCT-CCTGCAGCT	Design primers
344190	GAAGATTCTGCATCTTCCGCAGCTTCTGCATCTTCCGCAGCTTCCGCATCTTCC	Design primers
364653	ATTCTGTTGATTTTGTTGATTCTGTTG	Design primers
373355	GACTAACAAATCGACTAATAAATTTACTAATAAATC	Design primers
376380	GTATTAACGCAATG-TTGTTAACGCAATG-TTGTTAACGCAATG-TTGTTAACGCAATG-TTGTTAACGCAATG	Design primers
381989	ACTTAGTAAGC-GTTTAGTAAGC-GTTTAGTAAGC	Design primers
393196	CAAGTATGAGCGTAAGTATGGGCGCAAGTATGAATGCAAATATGAGTG	Design primers
393422	GTCTGATCAAGAATCAGT-GCCTCCTCAAGAATCAGT-GCCTCCTCAAGAATCAGT-GCCTCCTCAAGAATCAGT	Design primers
395696	TAGCGATTTTGATAGTGATTTTGGCGGCGATTTTGA	Design primers
395937	TCTTATGGCTCTTCTTACGGTTCTTCTTACGGCTCG	Design primers
398480	TGTGAAGTAAGTAAGTCTGGAATAAGTAAGGCTGAAGTAAGTAAG	Design primers
415941	CGTAAAAATAGCGTCAAAATAGCGTAAAAAACG	Design primers
417596	AGAATCTGCTGAATCTGCCGAATCTGC	Design primers
417624	GAAAATACAGAATCTTCCGAAAATAAAGAATCTGCTGAAAATACAAAATCTGCC	Design primers
418748	AGTGATGTGCGCAATGATGTGCGCAATGATGTGCAC	Design primers
421077	GTTATTGTTTGCTGCGTTCTGGGTTGCTGCGTTCTGGTTTGCTGC	Design primers
425113	GCTGCTGCTGCTGGTGCTGCTGCC	Design primers
431806	TCTTGCGGCTTTTGCGGCTCTTGCGAC	Design primers
433167	GAATTTTAGTGCAAGTTTAGTGCAAGTTTAGTG	Design primers
438466	CGAAGTAAGTGT-AAAAGTAAGTGT-AAAAGTAAGTGT	Design primers
454165	CTAACGAAACCAACTTAACCGAAACCAACTTAACCGAAACCAACT	Design primers
454280	TAATCAAAAATCTAAGCAAAAAACCAATCGAAAATC	Design primers
461714	GCTGGTAAT-ACTGGTAAT-ACTGGTAAT	Design primers
462020	GCTGCCAATGGCAACGCAAGTTCTTCCAATGGCAACGCAAGTGCTGCGAATGGCAACGCTGCT	Design primers
462355	CCGAATAACCTGAATAACCTGAATAAC	Design primers
464882	GTTAGCAAAGATAGCAAAGCTAGCAAA	Design primers
484589	AATAATAATAAATAATAGCAAATAATTATG	Design primers
489548	TTGCCGGATTCGTTGCCAGCTTCGTTACCGGATTCGTCGCCGGATTCG	Design primers
489903	CGTCACCTGCGTTACCTGCGTCACCAG	Design primers
493372	TTCTGCTCCTGCTTCTGTTCCTGCTTCTGT	Design primers
511280	GTTTGTTATTTAGTTTGTTAGTTAGCTTGTTAGTTA	Design primers
577662	TTGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA	Design primers
583374	GAAGTATCG-CAAGTATCG-CAAGTATCG	Design primers
596246	AAAAATAGC-AAAAATAGC-AAGAATAGC	Design primers
599571	GGAGATGTTATGGGAGACATTATGGGTGACGTTATG	Design primers
603780	AAACTGAAAAACTAAAAAACTGAA	Design primers
610447	CTAATAATTACGAGTAATTACTAATGAATA	Design primers
616692	AGCGAGAATAATAGCGAAAGTAATAGCGAAAGTAAT	Design primers
657920	GCTTTTGGTTTTTCTTTTGGTTTT	Design primers
665194	TCAATTATTATTCAACTATTGTTCAAGCATTAT	Design primers
707881	TTGGTTTCG-TTGGTTTCG-TTGGTTTTG	Design primers
823357	AAGAAAATAAGTCTGAAGAAAATAAATCTGAGGATAATAAGTCTG	Design primers
832456	CAAGGGAACAAG-ATAGGGAACAAG-ATAGGGAACAAG	Design primers
844341	TGCAAGCATACGCAAGCAGATGAAAGCAAA	Design primers
846331	AGGAAATGAGTAAATGAGTAAATG	Design primers
847210	GATTTTGAAGAATTTGAAGAATTTGAA	Design primers
919101	GATGTATCT-GATGTATCT-GATGAATCT	Design primers
959119	CAACGAAAACGAAAACGACAACAAAAACGACAACAAAAACGACAACGC	Design primers
959547	AAAACAACGCGAACAACAACGAGAAAAACAATGCGA	Design primers
999253	AAAATAACTAAAATAACCAACATAACT	Design primers
1004446	GCAATTTAAATGCAGTCTAAATGCAATCTAAAC	Design primers
1015571	TAGTATTAAAGAATATTAAAGAGTATTAAA	Design primers
1022532	ACTGCTTACGTAAGACTATTA-ACTACTTACGCAAGATTATTA-GCTACTTACGCAAGATTATTA-GCTACTTACGCAAGATTATTA	Design primers
1054266	TTTCTAAATACTTTTTAACTACCTTTTAAATAC	Design primers
1071646	CATATATACATAGATATACATTTATATACA	Design primers
1078727	TTTTATTCCT-CGTTATTCCT-CGTTATTCCT	Design primers
1081586	TTCGCTATTTTCACTATTTTGCGCATTATTTTCACTATTTTGCGCATTATTTTCACTATTTTG	Design primers
1083662	ACGTTTTCTACTTTTTCTACGTTTTCT	Design primers
1095547	AAAGAC-AAAGAC-AAGAAC-AAAGAC-AAGGAA-AAAGAC	Design primers
1099690	CGGTTGGTGCCGTTGGTGCGGTTGGAG	Design primers
1125025	GGTGCTGGTGCAGTTGCTGTTGCT	Design primers
1135236	TTCCGTCCGA-ATCCGTCCGA-AACCGTCCGA	Design primers
1142855	ATTATTCAGTTTCGCTAGAATCTTCAGTTTTGCTAGAATCTTCAGTTTCGCTAG	Design primers
1163549	CATTACCAATACCATTACCATTAG	Design primers
1173309	AAACTGCA-AAACTGCA-AAACCGCA	Design primers
1201619	CAACGTTTGCAGAACCAGTATTTGCAGAACCCACTTTTGCAGAAT	Design primers
1206301	TTATTATTTAT-TCTTTATTTAT-TCTTTATTTAT-TCTTTATTTAT	Design primers
1208534	AAAACAAATCAAAATTAAACAAAAT	Design primers
1210002	TTCACCTTCACCAGGTTCATCTCCGCCAGGTTCATCTCCACCTGG	Design primers
1224215	TAGATTCAGTAGATTCATTAGTTTCAG	Design primers
1224290	TATCAGTAGTCTCAGTAGTCTCAGTAG	Design primers
1225488	TTTTAGTTCTAGCTTTAGTTTTAT	Design primers
1242256	TGTTTGAGTCAAATCTTTCGTTTGAGTAAAGTCTTTCGTTTTAGTCAAATCTTA	Design primers
1263673	TTTTTTGATACTAGATTTTTTTATATTAGATTTTCCGATATTAGA	Design primers
1275892	AGTTTTATTTGAGTTATTTGTTTGTTTTGAGTTATTAGTTTGTTTTGAGTTATC	Design primers
1300514	TTTAACAACATTATTTTTATCAATATTATGCTTAGCAAAATTATT	Design primers
1317019	ATTTATTACTATTTATTACAATTTTCTACTATTTCCTACT	Design primers
1318646	AGCTAAGTTAAGATAAGCTAAGCTA	Design primers
1323352	GCGTTATTT-ACGTTATTT-ACGTTATTT	Design primers
1324602	TACAGGCTGAGCTACTGGTTGAGCTACTGGTTGAGC	Design primers
1353175	CGCCTTACCGTCAGCAGATTTACCGTCAGCCGACTTACCGTCAGC	Design primers
1356780	CAAATGGAGAATCAAATTGAGAGTCAAACGGAGAAG	Design primers
1356964	ATTAGA-ATTAGA-GTTAGA-ATCAGA	Design primers
1359057	CAAAACTACAAAGCTACAAAACCA	Design primers
1422395	TGTAAGTTTTGTAAGGTTTATAAGTTTTGTAAGTTC	Design primers
1435247	TTAGCAGTCTGATCATTCTTTGGAGTAGTCTGATCAGTCTTTGGAGTAGTCTGATCAGTCTTT	Design primers
1447464	AAAAA-ACAAA-AAATA-AACAA-AACAA-AAAAA	Design primers
1456901	GACTATCGCGACTATCACGGCTATCGC	Design primers
1456969	AAATCATCACGCAAATCATCATTCAAGACATCACGC	Design primers
1519557	TTTCTTTGAAGTAGTCTTCTTTGTAGAAGTTTTCTTTGCGGTAGA	Design primers
1527489	GACAAAGATAAAGACAAGGACAACGACAAC	Design primers
1530012	CCGCCCATGCCACCCATGCTGCCCATG	Design primers
1603783	AATAAATTTACATAAATCTAAGTAAATTTA	Design primers
1604642	AGTTGCAATATAGTTGCCTTATATTTGCACTAT	Design primers
1608283	AATGTAATTAAATATATTTAAATATAATTA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

7062

ACGCCTTCGCCTTCGCCTACGCCG