Microsatellites /Tandem Repeats database

Genome: Clostridiales genomosp. BVAB3 str. UPII9-5

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
123374ACTACCCAAGGT-ACTACCCAAGGT-ACTACCCAAGGTDesign primers
165615TGAAACAAGTGCTTA-TGAAACAAGTGCTTA-TGAAACAAGTGCTTADesign primers
216267GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGADesign primers
216334ACTGAGCCA-ACTGAGCCA-ACTGAGCCADesign primers
251483AAGCCC-AAGCCC-AAGCCC-AAGCCC-AAGCCCDesign primers
300402CAAAGTATGCAAAGCATG-CAAAGTATGCAAAGCATG-CAAAGTATGCAAAGCATGDesign primers
303018TGTTTAAGA-TGTTTAAGA-TGTTTAAGADesign primers
349764GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACADesign primers
523358TGAACTGGCCGTC-TGAACTGGCCGTC-TGAACTGGCCGTCDesign primers
923118GAAAATTGTA-GAAAATTGTA-GAAAATTGTADesign primers
975384CTGAAACAGGTT-CTGAAACAGGTT-CTGAAACAGGTTDesign primers
1093672CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGTDesign primers
1213203AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AADesign primers
1218789TTCCGGTGGAGT-TTCCGGTGGAGT-TTCCGGTGGAGTDesign primers
1417865CGCATCTGG-CGCATCTGG-CGCATCTGGDesign primers
1503319GTTCTGCAT-GTTCTGCAT-GTTCTGCATDesign primers
1521743GCTCAG-GCTCAG-GCTCAG-GCTCAGDesign primers
1530060CGGAGCTTACAG-CGGAGCTTACAG-CGGAGCTTACAG-CGGAGCTTACAGDesign primers
1530731GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACADesign primers
1594962GGCGGCTGCGACTCGGACGGCACC-GGCGGCTGCGACTCGGACGGCACC-GGCGGCTGCGACTCGGACGGCACCDesign primers

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