Microsatellites /Tandem Repeats database

Genome: Clostridiales genomosp. BVAB3 str. UPII9-5

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
123373GACTACCCAAGG-TACTACCCAAGG-TACTACCCAAGGDesign primers
165614GTGAAACAAGTGCTT-ATGAAACAAGTGCTT-ATGAAACAAGTGCTTDesign primers
196230AGCGGCCGGACAGGCAGGCGGACAGGCGGCCGGACAAGCAGGCGGACAAGCGGCCGGTCAAGCAGGCGGACAAGCGGCCGGTCAAGCAGGCGGACADesign primers
196327GCGGCCGGACAAGCGGCCGGACAGGCAGCCGGACAADesign primers
196364CAGGCGGACAAGCGGCCGGACAGG-CAGGCGGACAAGCGGCCGGACAGG-CAGGCGGACAAGCGGCCGGTCAAG-CAGGCGGACAAGCGGCCGGACAGG-CGGCCGGACAAGCGGCCGGACAGGDesign primers
216240GCCAACTGA-GCCAACTGA-GCCAACTGG-GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGA-GCCGACTGA-GCCAACTGA-GCCAACTGA-GCCAACTGADesign primers
244944TGCCGGGTGCGGCAACTTCAGCTGAGTCGGGTGCGGCAACTTCAGCTGAGCCGGGTGCGGCAACTTCAGCTGDesign primers
251482TAAGCC-CAAGCC-CAAGCC-CAAGCC-CAAGCC-CAAGCCDesign primers
259104AGTCGGACTGCAGCCGGACTGCAGTTGGACTGCDesign primers
300400TACAAAGTATGCAAAGCA-TGCAAAGTATGCAAAGCA-TGCAAAGTATGCAAAGCA-TGCAAAGTATGCAAAGCADesign primers
303018TGTTTAAGA-TGTTTAAGA-TGTTTAAGADesign primers
349763TGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGACDesign primers
399032GCAACGGCGGCTGACTCGGTAGCAACGGCGGCTGACCCGGCAGCAACGGCGGCTGACCCGGCADesign primers
403524ACACTGCGGAACCGAACACTGCGCAACCGAACACTGCGGAACCTADesign primers
407000GAAGATGAAAATTCGAGC-GAAGATGAAAATTCGAGC-GAAGATGAAAATCCGAGC-GAAGATGAAAATCCGAGCDesign primers
407223AAAAGCCGGATGAAGAGCCGGATGAAAAGCCGGAGGDesign primers
415454GGTTGATGGCCC-GGTTGATGGCTC-GGTTGATGGCTC-GGTTGATGGCCCDesign primers
421335GCGCAGCCAATGTCCCGGGCGCAGCCAATGCCCCGGGCGCAGCCAATGCCCCGGDesign primers
523357TTGAACTGGCCGT-CTGAACTGGCCGT-CTGAACTGGCCGTDesign primers
523397TGAACTAGCCGTCTGACCTAGCCGTCTGAACCAGCCGTCDesign primers
523440CTGGCCGTCTGAACTGGCCGTCTGACCTAGCCGTCTGAADesign primers
707202GATGTGGATGCGGCCGATGTGGATGCAGCCGATGTGGATGCAGCCDesign primers
812218ACTTATTTGAACTCATTTGAACTTATTTGGDesign primers
923114TGTTGAAAAT-TGTAGAAAAT-TGTAGAAAAT-TGTAGAAAAT-TGTCGAAAATDesign primers
975383CCTGAAACAGGT-TCTGAAACAGGT-TCTGAAACAGGTDesign primers
1093671GCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTGDesign primers
1143790TGGTTTGCTCATTGCTTTGCTCATTGCTTTGCTCATDesign primers
1172147ATACAGCCGAGCCAAATACGGCCGAGCCAAATACGGCCGAGCCAADesign primers
1179530GTATGACACC-GTATGACACC-GCATGACACCDesign primers
1213202CA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AADesign primers
1218788CTTCCGGTGGAG-TTTCCGGTGGAG-TTTCCGGTGGAGDesign primers
1218863CCGGTGGAGTTTCCGGTGGAGTTCCCGGCGGAGTTTDesign primers
1417865CGCATCTGG-CGCATCTGG-CGCATCTGGDesign primers
1503319GTTCTGCAT-GTTCTGCAT-GTTCTGCATDesign primers
1521743GCTCAG-GCTCAG-GCTCAG-GCTCAGDesign primers
1530059ACGGAGCTTACA-GCGGAGCTTACA-GCGGAGCTTACA-GCGGAGCTTACADesign primers
1530729TTGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGA-CAGADesign primers
1594950TCGGACGGCATTGGCGGCTGCGACTCGGACGGCACCGGCGGCTGCGACTCGGACGGCACCGGCGGCTGCGACDesign primers
1730647CTTGTCCGACCGCCTGTCCGACCGCTTGTCCGGCCGDesign primers
1731594CCTCCCGGCGTT-ACTCCCGGCGTT-ACTCCCGGCGTTDesign primers
1756675AGTTTGTTTGCAGTTTGTATGCAGTTTGTTTGGDesign primers

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