Microsatellites /Tandem Repeats database

Genome: Clostridiales genomosp. BVAB3 str. UPII9-5

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
8252CCGTTCCGGTAGATTAAGACTGTTCCGGTTGTTTAAGACTGTTTCGGTAGTTTAAGADesign primers
11168CAAATACAAGTACAAACACAAGTACAAGTADesign primers
31216CGCACCGTTTGTCGCACTGCTTGTCGCACCGTTTTCDesign primers
31912CTGCCCAACAGCAGCAGCTTGCCCAACAACAGCAACTTGCCCAACAACAGCAGCDesign primers
57253TCGTACACTCGTACAATCGTAAACDesign primers
61065CATCCGTCGCGCCAACTGCCGACACATCCGTCGCGCCAACCGCCGACACACCCGCCGCGCCGACTGCCGAAADesign primers
123372CGACTACCCAAG-GTACTACCCAAG-GTACTACCCAAGDesign primers
165610GATAGTGAAACAAGTGCTTATGAAACAAGTGCTTATGAAACAAGTDesign primers
177928GGCAAACTGGAGAAGGCCGACAAGCCGGAGAAGGCCGGCAAGCCGGAGAAGGCCGACAAAGCGGAGAAGGCCGGCAAACCGGAGAAGGCCGACAAGCTGGAGAAGGCCGGCAAACCGGAGAAGGCCDesign primers
178074CAAACCGGAGAAGGCCGACAAGGCGGAGAAGGCCGACAAAGCGGAGAATTCCGADesign primers
188116AAGGCCGAAGCCGGAAGGCGGAAGTCGGAAGGCAGAAGGCGGDesign primers
191008GGCAGTGGCAATGGCAGTGTCAGTDesign primers
196228AGAGCGGCCGGACAGGCAGGCGGACAGGCGGCCGGACAAGCAGGCGGACAAGCGGCCGGTCAAGCAGGCGGACAAGCGGCCGGTCAAGCAGGCGGADesign primers
196325AAGCGGCCGGAC-AAGCGGCCGGAC-AGGCAGCCGGAC-AAGCAGGCGGAC-AAGCGGCCGGACDesign primers
196386GGCAGGCGGACAAGCGGCCGGACAGGCAGGCGGACAAGCGGCCGGTCAAGCAGGCGGACAAGCGGCCGGACAGGCGGCCGGACAAGCGGCCGGACADesign primers
198264GCTGCAGTTGTTGCAGTTGCTGCAGCTDesign primers
216221AACCGACTGAGCCAACTGGGCCAACTG-AGCCAACTGAGCCAACTGGGCCAACTG-AGCCAACTGAGCCAACTGAGCCAACTG-AGCCAACTGAGCCAACTGAGCCAACTG-AGCCGACTGAGCCAACTGAGCCAACTG-AGCCAACTGDesign primers
231515CGGCGGCACCGGTGGCACCGGCGGCAGDesign primers
238073TCCAAACTTCAACTTCCAAAATTCGACTTCCAAACTTCAAGTDesign primers
241540CGCGGCCAACAGCGGCGCGGCCAACAACGGCGCGGCCAAAAATGGCGCGGCCAAAAATGGCGCGGCCAACAGCGGCGCGGCCAACAGAAGDesign primers
244940GATTTGCCGGGTGCGGCAACTTCAGCTGAGTCGGGTGCGGCAACTTCAGCTGAGCCGGGTGCGGCAACTTCADesign primers
251477AAGCTT-AAGCCC-AAGCCC-AAGCCC-AAGCCC-AAGCCC-AAGCCT-AAGCCTDesign primers
259101TGAAGTCGGACTGCAGCCGGACTGCAGTTGGACDesign primers
280257TCTGTACCCTGTACTCTGCACTCTGTACTCTGCACTCTGTACDesign primers
285654GCAACAACGGCAACAATGCCAACAACGDesign primers
300398GGTACAAAGTATGCAAAG-CATGCAAAGTATGCAAAG-CATGCAAAGTATGCAAAG-CATGCAAAGTATGCAAAGDesign primers
303017TTGTTTAAG-ATGTTTAAG-ATGTTTAAGDesign primers
349614AATTGTAATTTAATTGTAAGATAAATGTAAGTTDesign primers
349761TTTG-ACAG-ACAG-ACAG-ACAG-ACAG-ACAG-ACAG-ACAG-ACAG-ACAG-ACAGDesign primers
397003TCGTTCAGTGCATCGTTCAGTGGACCGTTCAGCACATCGTTCAGTGGACCGTTCAGTGGATCGCTCAGTGCADesign primers
399021CTGAAACGGCGGCAACGGCGGCTGACTCGGTAGCAACGGCGGCTGACCCGGCAGCAACGGCGGCTGACCCGGCAGCAACGGCAGDesign primers
403520ACGGACACTGCGGAACCGAACACTGCGCAACCGAACACTGCGGAADesign primers
406998ATGAAGATGAAAATTCGA-GCGAAGATGAAAATTCGA-GCGAAGATGAAAATCCGA-GCGAAGATGAAAATCCGADesign primers
407222AAAAAGCCGGATGAAGAGCCGGATGAAAAGCCGGAGDesign primers
415452GTGGTTGATGGC-CCGGTTGATGGC-TCGGTTGATGGC-TCGGTTGATGGCDesign primers
421202ACCCCGGGCGCAGCCAATGCGCCGAGCGCAGCCAAT-GTCCCGGGCGCAGCCAATGCCCCGTGCGCAGCCAAT-GGCCCGGGCGCAGCCAATGCGCCGAGCGCAGCCAAT-GTCCCGGGCGCAGCCAATGCGCCGAGCGCAGCCAAT-GTCCCGGGCGCAGCCAATGCCCCGGGCGCAGCCAATDesign primers
421403ACCCCGGGCGCAGCCAATGCGCCGAGCGCAGCCAATGTCCCGGGCGCAGCCAATGTCCCGGGCGCAACCAATDesign primers
421496ACCCCGGGCGCAGCCAATGCGCCGAGCGCAGCCAATGTCCCGGGCGCAGCCAATGTCCCGGGCGCAACCAATGCGCCGAGCGCAGCCAATGTCCCGGGCGCAACCAATDesign primers
441729GATCCAGATTCAGATCCGGATTCADesign primers
443535TGCCGGCAGCTCCTGTAGTTTCTGTGCTGGTGGCTCCTGTAGTTCCTGTGCCGGCAGCTCCTGTAGTTTCTGTGCCGGCGGATCCTGTAGTTCCTGDesign primers
453713AGCAAATGTTCCTCAGTAAATGTTCCTCAGTAAATATTCCTCDesign primers
467603CGAGCGCGGTAGCAGAAAGCGCGGTAGCAGATGGCGCGGTAGCAGDesign primers
467890GGCGCAGTTGCAGATGGCGCAGCTGAAGAAAGCGCGGTAGCAGATDesign primers
468018TGCAGATGGCGCGGTAGCAGATGGCGCAGCTGAAGAAAGCGCGGTGGCAGATGGCGCGGTAGCAGATGACGCGGCDesign primers
514803TAATATTAATGATATTAATGATATTAADesign primers
523120TGATGGTTCAAAGTCGGATAGTTCAAAGCCTGATGGTTCAAAGCTTGATAATTCAAAGTCDesign primers
523356CTTGAACTGGCCG-TCTGAACTGGCCG-TCTGAACTGGCCGDesign primers
523396CTGAACTAGCCGTCTGACCTAGCCGTCTGAACCAGCCGTCTGAGCTGGCCGTCTGAACTGGCCGTCTGACCTAGCCGTCTGAACCAGCCGTCTGAACCAGCCGTCTGAGCTGGCCGTCTGAACTGGCCGTCTGAACTAGCCGCTTGAACTAGCCGTCTGAACTAGCCGATTGAACTGGCCGTCTGAACTGGCCGTCTGAACTAGACGCTTGAACTGGCCGTCTGAACTGGCCGTDesign primers
523651GCCGTCTGAACTAGCCGCTTGAACTAGCCGTCTGAACTADesign primers
523703GCCGTCTGAACTGGCCGTCTGAACTAGCCGATTGAACTGGCCGTCTGAACCAGCCGTCTGAACTAGCCGCTTGAACTGDesign primers
523813TGAACTGGCCGTC-TGAACTGGCCGTC-TGAACTAGACGTCDesign primers
575516GAACCATGAAGTACGAACCACGAAGTACGAACCGCGAAGTACDesign primers
594598GCCGGCTGCTCGTCCTTGCCAACCGGCAGCCCGTCCATGCCAACCGGCTGCTCGTCCTTGCCAACCGGCAGCCCGTCCATGCCAACCGGCTGCTCGTCCTTGCCADesign primers
635473GCCAATCGGGCCAATCCGGCCAATCCGDesign primers
640631AAGTTATTATAAAGTCATAATAAAGTTATTATADesign primers
691327TTAAATTGAAATATTAAACTGAAATATAAAAATGAAATADesign primers
691583AATCCGAGC-AATCCGAGC-AATCCGATCDesign primers
698396AGTTC-AGTTC-AGATC-AGATC-AGTTADesign primers
707197TGGCTGATGTGGATGCGGCCGATGTGGATGCAGCCGATGTGGATGDesign primers
725393GCGGCGATGAGTGAACCGGCGATGAACGAATCGGCGATGAACGAADesign primers
780313ATAACGG-ATAGCGG-ATAGCGG-ATAGCGGDesign primers
781913GCGGAATGA-CCGGAATGA-CCGGAATGADesign primers
782359AGTCGGACGCAGTCGGATGCAGTCAGATGCDesign primers
787463ATGGCTATAGCTATGGCCATGGGTDesign primers
812217GACTTATTTGAACTCATTTGAACTTATTTGGACTCATTTADesign primers
920096GCATGAACATGAGCATGAGCATGCDesign primers
923112AATGTTGAAA-ATTGTAGAAA-ATTGTAGAAA-ATTGTAGAAA-ATTGTCGAAADesign primers
923728GCCGAACCG-GCCGAACCG-GCTGAACCGDesign primers
949690CGCCGGAAAGCAAAACGCCGCCAACGGAAAGCGAAACGCCGCCGACAGAAAGCGAAACGTCGCDesign primers
975382GCCTGAAACAGG-TTCTGAAACAGG-TTCTGAAACAGGDesign primers
978586TGCCTGAATCGCCTGAATTGCCTGAACDesign primers
988994GCTGAG-GCTGAG-GCTCAG-GCTCAGDesign primers
1027383TACAGTTATAGTTACGGTTACGGTDesign primers
1069381TCAGGA-TCAGGA-TCAGCA-TCAGGTDesign primers
1090591CCACAAGCTGCAATAAGCTGTAACAAGCTGCAACATGCTGDesign primers
1093668TACG-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGTDesign primers
1121918GGCCGTTAGCTTGGCCGTTGACTTGGCCGTGAGCTCDesign primers
1130936GGTTGCGGTTCTGGTTGCGGCTGCGGTTCTGGTTTCGGTTGGGGTTCTGGTTTCGGCTGGGGTTCTGGTTTCDesign primers
1143788AATGGTTTGCTCATTGCTTTGCTCATTGCTTTGCTCDesign primers
1144362TATATATTTTTTATGCATGCATTTTTTATGTATAGAATTTTTATADesign primers
1168841TAATGAACGTAACGAACGTAATGAACADesign primers
1172123CTGAGCCAGATACAG-CTGAACCAGATACAG-CCGAGCCAAATACGG-CCGAGCCAAATACGG-CCGAGCCAATTACAGDesign primers
1179528CTGTATGACACCGTATGACACCGCATGACACCGTATAACACTGTACAACADesign primers
1188651CATTAAATCCTACTGCACTTTAAATCCTACTGCACTTTAAATCCTGCTTCADesign primers
1213200AT-CA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AADesign primers
1218787TCTTCCGGTGGA-GTTTCCGGTGGA-GTTTCCGGTGGADesign primers
1218824TTCCCGGCGGAGTTTCCGGTGGAG-TTCCCGGCGGAGTTTCCGGTGGAG-TTTCCGGTGGAGTTCCCGGCGGAGDesign primers
1228100TAGCTGTGTAATCTAGCTGTGTAATGTCGATGTGTAATCDesign primers
1243070GGACGATGCGAGACGGTGCGGGACAGTGCGDesign primers
1248809ACAAATTTCAACAAATGACAACAAATTACGDesign primers
1264186ATTCATCATTTTATCAATCATTTTATCAATCATTTTDesign primers
1285600GCCGCGACTGAGGCTCGACTGAGCTGTGACTGADesign primers
1313983CTTATGCTTTATTATGCCTTTTTACGCTTTDesign primers
1335919AAGGGTTGAATTTTAATGGGTGAATTTTAAGTGTTGAATTTTDesign primers
1384607ATCAGCTGACATCGGTTGAAATCGATTGACATCAGTTGAAATCGGCTGAAATCGGTTGACDesign primers
1396784TATGTTCTAATTATGTTTTAATTATGCTTTAATDesign primers
1417844TGCTGCATC-TGCTGCATC-TGCCGCATCDesign primers
1434960TTTTGCTACTTTTTCTACTTTTGCCACTTTTCCTACDesign primers
1444535AGTCATC-AGTCATC-AGTCGTC-AGTCGTCDesign primers
1465146CCGTCGGGCAACAGGTTCTGGCTATCGGGCGGCAGGTTCTGGCCTTCAGGCGACAGTTTCTGGCCGTCGGGCGGCAAGTTCTGGCCGTCGGGCGACGGGTTCTTGCCTTCAGGCGACAGTTTCTGGDesign primers
1502880TCGAACTACTACTCGTCGAACCGCTATTCGTCGAACTGCTATCCGDesign primers
1503318AGTTCTGCA-TGTTCTGCA-TGTTCTGCADesign primers
1517507ACGCATTCTGACGATGCGCATTCTTGCGATACACATTCTTTCGATGCGCATTCTGACCTTDesign primers
1521742CGCTCA-GGCTCA-GGCTCA-GGCTCADesign primers
1530058CACGGAGCTTAC-AGCGGAGCTTAC-AGCGGAGCTTAC-AGCGGAGCTTACDesign primers
1530727CCTT-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACADesign primers
1542114CCGATGACGGAGCCGACGACGAAGCCGACGACGGAGDesign primers
1544151CATCCGCTTTCACATCCGCATCCACATCCGCTTCCADesign primers
1551238TCATAGTCATCATAGCCATCATCGTCADesign primers
1568134GAAACCTGTTCAAGCGAAACCTGGTCAGGCGAAACTTGGTCAAACDesign primers
1588491TATAGGTTAAAATCTACTATAGATTAGAATCTGCTATAGGTTAAAATCTGCDesign primers
1590163TTTCTTTCTTCATAACTTTCTTCATTTCTCTCTTCADesign primers
1594945GCGGTTCGGACGGCATTGGCGGCTGCGACTCGGACGGCACCGGCGGCTGCGACTCGGACGGCACCGGCGGCTDesign primers
1642712TGACCT-TGAGCT-TGAGCT-TGACCTDesign primers
1665950GCATCCGGGTTCGCATCCGGCTTAGTATCCGGTTTCDesign primers
1678631CTTAGTGTTTGCCTTAATGTTTCCCTTAATGTTTGGDesign primers
1712859TCTCAGCCGTTGTCTCAGCTGCTGCTTCAGCCGTTGDesign primers
1716299TTTCAGCCGCCTTCAGCCACTTTCAGCCGCDesign primers
1721562CCGTTGTTGCCGTTGCTGCCGTTGTTGDesign primers
1729699CGCCGTTCG-CGCCGTTCG-CACCGTTCGDesign primers
1730646TCTTGTCCGACCGCCTGTCCGACCGCTTGTCCGGCCDesign primers
1730685TGTCCGGCTGCTTGTCCGGCCGTTTGTCCGGCCGCTTGTCCGGGTGCCDesign primers
1731593ACCTCCCGGCGT-TACTCCCGGCGT-TACTCCCGGCGTDesign primers
1742120CTGTTCCGGCTGACCCGGCTGTTCCGGCTGTTCCGGCTGGCCCGGCTGCCCCGGDesign primers
1756674TAGTTTGTTTGCAGTTTGTATGCAGTTTGTTTGDesign primers
1772178TCTTTCATATTTGCTTTCGTATTTTCTTTCATATTTDesign primers
1800464CGCCGTTCG-CGCCGTTCG-CACCGTTCGDesign primers
1808696CTGCCT-CTGCCT-TTGCCT-TTGCCTDesign primers

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