Microsatellites /Tandem Repeats database

Genome: Nitrosococcus halophilus Nc4

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
1607GGTGTGGATAAGTTGTGTATAACGCGTGGATAADesign primers
31120GGCTCAGGCCGAAGCTCCCGCTCAGGCCGAAACTCCCGCTCAGGCTGAAACTCCCGCTCAGGCTGAAACTCCCGCTCAGGCTGAAACTCCCGCTCAGGCTGAAACTCCCGCTCAGGCTGAAACTCCCGCTCAGGCTGAAACTCCCGCTCAGGCTGAAGCTCCDesign primers
177700GGTATGGGCGGCATGGGCGATATGGGCDesign primers
347546TCTAGGTATATAGGTATATAGGTADesign primers
370496GGC-GGC-GGC-CGC-GGC-CGC-GGC-GGCDesign primers
460313TCTAAGTTTCTATGTTACTAAGTTDesign primers
577960TCTTA-TCTTA-TTTTA-TCTTA-CCTTADesign primers
709524CTCAGTAA-TTCAGTAA-TTCAGTAA-TTCAGTAADesign primers
1131479TATGTCAGGGGTGACATCCAGATGTCATAGGAGGGGTGACACCCAGATGTCATAGGAGGGGTGACACCCAGATGTDesign primers
1223125TAGGGCGGCTTGGGGCGGCTTAGGGGGCCTDesign primers
1315122CAGTCCGGA-TAGGCCCGA-TAGGCCCGA-TAGGCCCGA-TAGGCCCGA-TAGGCCCGA-TAGGCCCGA-TAGGCCCGADesign primers
1315240AGACCCGAAAGACCTGAAAGACCCGAGDesign primers
1621822CTTATT-CATATT-CATATT-CATATT-CATATTDesign primers
1622085AATTTAAG-GATTTAAG-GATTTAAGDesign primers
1704062GCATGGCGGGCATGGCGCCCATGGCGGDesign primers
1836603TAATTATAATGATAATTGTTATTADesign primers
1946322CTGCTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGT-GCTTTGGTDesign primers
2226701CTGACCT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTT-GGCACTTDesign primers
2235597CGCCCGTCTATA-AGCCCGTCTATA-AGCCCGTCTTTADesign primers
2346399CAAGTGAAGTCTAGTCAAGTCTAGTCAAGTDesign primers
2570157AGCGGACCCCTTTA-GACGGACCCCTTTA-GACGGACCCCTTTA-GACGGACCCCTTTADesign primers
2832289GCTGAAGAAGAAGCCAAGCGCCATGCGGAGGAAGAAGCCAAGCGTCGTGCTGAGGAAGAGGCTAAGCGCCATGCGGAGGAAGAGGCCAAGCGCCATDesign primers
3101804TCGATGCGATGGATGACCCCTTTGTTCGATGGATGACCCCTTTGTTCGATGGATGACCCCDesign primers
3335411ACTACCCATGCCGCCGCCACCCATGCCGCCGCCACCCAAGCCGCCGCCACCCAAGCCGCCGCCACCCAAGCCGCCGCCACCCAAGCCGCCGCCACCCAAGCCGCCDesign primers
3335517CCACCCAAGCCACCGCCACCCAAGCCGCCGCCACCCAAGCCACCGCCGCCGAAGCCGCCGDesign primers
3335578CACAGCCGCCGCCGCCGAAGCCGCCGCCACCGAAGCCACCGCCGCDesign primers
3361226TCGACCTGCTCGAAACGCTTATCGACTTGTTCAAAGCGCTTATCGACCTGCTCGAAACGCTTGDesign primers
3422676AAACAAACCAAAACCAACCAAAACTDesign primers
3524115TGTCTCCTGAGGCGGAATGGTCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGCCTCCTGAGGTGGAATAGTCTCCTGAGGCGGAATAGTCTCCTGAGGCGGAATGGTCTCCTGAGGTGGACTDesign primers
3545624CTGCCGCTGCCCATGCCGCTGCCCDesign primers
3827660TACATAACCAATAGAGGGG-AACAGCACCAATAGAGGGG-AACAGCACCAATAGAGGGG-AACAGCACCAATAGAGGGG-AACAGCACCAATAGAGGGGDesign primers
3943209TGAAGCAAAATGAAGCACAGTAAATCAAAADesign primers
4046009TTGCCCGAT-ATGCCCGAT-ATGCCCGATDesign primers

Please help us improve this resource by reporting problems, suggestions etc.