Microsatellites /Tandem Repeats database

Genome: Herbaspirillum seropedicae SmR1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
59665CTTTTTCTACACCCT-CTTTTTCTACACCCT-CTTTTTCTACACCCTDesign primers
59711TTTTTCTACACCCC-TTTTTCTACACCCC-TTTTTCTACACCCC-TTTTTCTACACCCC-TTTTTCTACACCCC-TTTTTCTACACCCC-TTTTTCTACACCCCDesign primers
85046CAGCGCCAGCAG-CAGCGCCAGCAG-CAGCGCCAGCAGDesign primers
250166TGGCTCATG-TGGCTCATG-TGGCTCATGDesign primers
287914TAACTATC-TAACTATC-TAACTATCDesign primers
553463TGCCCAT-TGCCCAT-TGCCCAT-TGCCCAT-TGCCCAT-TGCCCAT-TGCCCAT-TGCCCAT-TGCCCAT-TGCCCAT-TGCCCATDesign primers
661385GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTT-GATTGGTTDesign primers
679225AGCAATACAG-AGCAATACAG-AGCAATACAGDesign primers
787594CAGATCAT-CAGATCAT-CAGATCATDesign primers
1046831TCTTCAC-TCTTCAC-TCTTCAC-TCTTCACDesign primers
1236531CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATC-CCCATCDesign primers
1458894AACATCAA-AACATCAA-AACATCAADesign primers
1597040TGCCTTCTT-TGCCTTCTT-TGCCTTCTTDesign primers
1625416CAAGGACAG-CAAGGACAG-CAAGGACAGDesign primers
1746389GGCATCATC-GGCATCATC-GGCATCATCDesign primers
1810258GAAGAG-GAAGAG-GAAGAG-GAAGAG-GAAGAGDesign primers
1824358CAGCAAGCAGAAAT-CAGCAAGCAGAAAT-CAGCAAGCAGAAATDesign primers
1918380TGATCAATG-TGATCAATG-TGATCAATGDesign primers
1950190GCCATT-GCCATT-GCCATT-GCCATTDesign primers
2119967GCCTTGTCGGCTGCA-GCCTTGTCGGCTGCA-GCCTTGTCGGCTGCA-GCCTTGTCGGCTGCA-GCCTTGTCGGCTGCA-GCCTTGTCGGCTGCADesign primers
2466303TTGGTGCAG-TTGGTGCAG-TTGGTGCAGDesign primers
2560624CAGTGGATG-CAGTGGATG-CAGTGGATG-CAGTGGATG-CAGTGGATGDesign primers
2651259TAACCAGCA-TAACCAGCA-TAACCAGCADesign primers
2665937GAGGCT-GAGGCT-GAGGCT-GAGGCTDesign primers
2714465AATT-AATT-AATT-AATT-AATT-AATTDesign primers
2728439CCTCACTGT-CCTCACTGT-CCTCACTGT-CCTCACTGT-CCTCACTGT-CCTCACTGT-CCTCACTGT-CCTCACTGTDesign primers
2757553TCGTGCGCA-TCGTGCGCA-TCGTGCGCADesign primers
3035111TGGTCA-TGGTCA-TGGTCA-TGGTCA-TGGTCA-TGGTCADesign primers
3171111AGGTAGATC-AGGTAGATC-AGGTAGATC-AGGTAGATC-AGGTAGATCDesign primers
3289241CTGGTGCAGGCGGTG-CTGGTGCAGGCGGTG-CTGGTGCAGGCGGTG-CTGGTGCAGGCGGTGDesign primers
3392306CAAAGAAT-CAAAGAAT-CAAAGAATDesign primers
3520214CGGCTTATC-CGGCTTATC-CGGCTTATC-CGGCTTATCDesign primers
3633377TCCCCACT-TCCCCACT-TCCCCACT-TCCCCACTDesign primers
4321415TCTTCC-TCTTCC-TCTTCC-TCTTCC-TCTTCC-TCTTCCDesign primers
4332543GGGAAGGTAAC-GGGAAGGTAAC-GGGAAGGTAACDesign primers
4372704GCCA-GCCA-GCCA-GCCA-GCCA-GCCADesign primers
4517433AGAAACGA-AGAAACGA-AGAAACGADesign primers
4873994GAAGAG-GAAGAG-GAAGAG-GAAGAGDesign primers
5165419TTGCATCCA-TTGCATCCA-TTGCATCCADesign primers
5185709TGGCGGA-TGGCGGA-TGGCGGA-TGGCGGADesign primers
5242142AAGAAGAG-AAGAAGAG-AAGAAGAGDesign primers
5489732CTCAATAAGTA-CTCAATAAGTA-CTCAATAAGTADesign primers

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