Microsatellites /Tandem Repeats database

Genome: Brachyspira pilosicoli 95/1000

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
2430AAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGACDesign primers
15252ATA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA-TTADesign primers
15973TAT-TAT-TAT-TAT-TAT-TAT-TAT-TATDesign primers
43695TATTTTTT-TATTTTTT-TATTTTTTDesign primers
622751ACTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGAC-TGTTGACDesign primers
672125AAATTTTT-AAATTTTT-AAATTTTTDesign primers
694278AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
701092TATTTTATTATAATTTATTATATTTTATTADesign primers
728323AAAATATAAAAAAATATATAAAATTATAAADesign primers
731232AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
812868ATAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCA-GCAATCADesign primers
912309CATTG-TCTTG-TCTTG-TCTTG-TCTTG-TCTTG-TCTTG-TCTTG-TCTTG-TCTTG-TCTTG-TCTTGDesign primers
1093894AAAATAATAT-AAAATAATAT-AAAACAATATDesign primers
1133628TTTTTTTATTTATTTTTATTTTTTGTTATTDesign primers
1236001TT-TT-TT-AT-TT-TT-TT-TT-TG-TT-TT-TT-AT-TT-AT-TT-TDesign primers
1351679TCTAAATAATTAATTTTATCATCTAGATAATTAATTTTATCATCTAGATAATTAATTTTATTADesign primers
1436233AGAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTC-TAAACTCDesign primers
1612401AAATATAAGCAAATATAAGGAATTATAAGCDesign primers
1665548ATGA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACADesign primers
1793431TTC-TTC-TTC-TTC-TTC-TTC-TTC-TTCDesign primers
1793834TTTTCATCTATTTTGTTTTCTTCTATTTTGTTTTCTTCTATTTTGDesign primers
1793880TTTCTTTTATTTTGT-TTTCTTCTATTTTGT-TTTCTTCTATTTTGT-TTTCTTCTATTTTGT-TTTCTTCTATTTTGT-TTTCTTCTATTTTGTDesign primers
1847223AATAATAATTAATGATAATTAATAATAATGDesign primers
1869234AGAATTAATAAAGAATTAACAAAGAATTAACAADesign primers
1902522AAAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGAT-TGATDesign primers
2043855CTGATTCAAAGATAG-ATGATTCAAAGATAG-ATGATTCAAAGATAG-ATGATTCAAAGATAG-ATGATTCAAAGATAG-ATGATTCAAAGATAGDesign primers
2125831TAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
2140982GAGTG-TAGTG-TAGTG-TAGTG-TAGTG-TAGTG-TAGTG-TAGTGDesign primers
2575301ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATTDesign primers

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