Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Brachyspira pilosicoli 95/1000

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
2426	AAATA-AGACC-AGACC-AGACC-AGACC-AGACC-AGACC-AGACC-AGACC	Design primers
5810	TTTATATATATATTTAAATTTATT	Design primers
15251	TAT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT-ATT	Design primers
15972	GTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA	Design primers
42414	AT-AT-AT-AT-AA-AT-AA-AT-AT-AT-AG-AT	Design primers
52745	TTTTATTATTTTTTTATTTTATTG	Design primers
54471	AATGTTTAATAAAAGGGTTAATAAAATGAATAATAA	Design primers
54718	TT-AT-AT-AT-TT-AA-AT-AT-TT-TT-AT-AT	Design primers
99234	AAATATAATAATATAAAATTAAATA	Design primers
164542	AATAGAAAAAACAGAAAAAATAGAAAA	Design primers
165660	AAAATATAAATAAAAACAAAAATC	Design primers
212834	ATTATTGTTTTGATTGTTATTTTCTTGATTATCATTATTTTGGTT	Design primers
212943	TTATTATTATTTTCATTATTATTA	Design primers
224617	TGTTGTGTTTGTATCAGTTGTATTTGTAACTGTTTCGTTTGTATC	Design primers
250909	GAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT	Design primers
282664	TTT-TAT-TAT-TAT-TTT-TTT-TAT-TAT	Design primers
292597	TA-AA-AA-TA-AA-AG-CA-AA-AA-TA-GA-AA	Design primers
324497	AA-AA-AC-AA-AA-AA-GA-AA-AA-AA-TA-AA-A	Design primers
343733	TTTATTATTTTTTATATATTATTTTTTA	Design primers
347254	AAATTAAATGAAATGAATTTTAATT	Design primers
351435	TTTATTGTTTTTATATTCTTTTTTTACTGCTTT	Design primers
403921	AACATACTTAGAAACAAAATTAGAAACATGCTTACA	Design primers
407107	ATTATAAAAATTAGAAAAATTATCAAA	Design primers
413488	TATATTATTTTTTATTACATTATAG	Design primers
430724	AA-AA-AA-TT-AA-AA-AA-AC-TA-AA-AA-GA-AA-TA-AA	Design primers
521186	TTTAATCTTTTAATATTTTAATCA	Design primers
523453	CTTTAATTTACTTTGACTTACTTTGATTTT	Design primers
547451	TTTATATTTTTTTATAATATTTTTTACTTT	Design primers
547799	ATAATTTTACAAATATTTTACAATAAATTTACA	Design primers
600824	AAATAA-AAATAA-AACTAA-TAATAA	Design primers
610590	ATC-AAC-AAC-ATC-AGC-AAC-ATC-AAC-AAC	Design primers
622749	TTACTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG-ACTGTTG	Design primers
628990	TT-TA-TG-AA-TA-TT-TA-TT-AA-TA-TT-TA-TA-TA-TA	Design primers
643430	TTAATTTTATTTTGAATTTTATTT	Design primers
672120	TTTTAAAATTTTTAAATTTTTAAA	Design primers
681975	TTAATTTTTTAATATTTCAATTTT	Design primers
694277	GAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA	Design primers
694715	TAATAAAAATAATAATACTAATAA	Design primers
694873	ATAATAATATAATTAATAATAAAAATAATAATATAA	Design primers
701091	CTATTTTATTATAATTTATTATATTTTATT	Design primers
704887	CAAATAGAAAATAGCAAATATTAAATAG	Design primers
731229	AAC-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT	Design primers
732438	TATAAATATATATTTAAAAATAAA	Design primers
733957	TTATATTAGAATATATTAAATTATT	Design primers
740382	CC-AA-AT-AA-AC-TA-AA-TA-AA-AC-AA-AT-AA-A	Design primers
772930	TAATAATAACAATATTAATAATAA	Design primers
777083	ATTTTTTAAGAAATTTTTTATTAAATTTTTTATTAA	Design primers
784946	TA-AA-AT-AT-TA-TT-TA-TA-TA-TT-AT-TA-AA-AT-AT-AA-A	Design primers
812754	TATAAAAAA-TATAAAAAA-TATGAAAAA	Design primers
812866	TGATAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT-CAGCAAT	Design primers
847020	TATTTA-TATTTA-AATTTA-TATTAA	Design primers
881370	AT-TT-TT-AC-TT-TT-AA-TT-TT-AT-CT-TT	Design primers
912306	TCTCA-TTGTC-TTGTC-TTGTC-TTGTC-TTGTC-TTGTC-TTGTC-TTGTC-TTGTC-TTGTC-TTGTC	Design primers
999834	GTTAAAAAAGAAGTGAAAAAAGCAGTTAAAACAGTA	Design primers
1006477	AGTTTTTTTATCTTTTTTTAAAGCTTTCTTCTCTTTTTTTAGAGCTTTCTTTTCTTCTTTTAAAGCTTTTTTAGCTTCTTTCAA	Design primers
1010951	AATTAAAAGTAAAACTAAAATTAT	Design primers
1021180	ACAACAAGAACAACAACAAGAACAGCAACA	Design primers
1064549	AA-TA-AA-AG-AA-AA-CA-AA-AT-AG-AA-AA-A	Design primers
1093893	GAAAATAATA-TAAAATAATA-TAAAACAATA	Design primers
1100581	GTATAGAAAAGAATACAAAATTATAAAAAA	Design primers
1104449	ATAAAAAAATATAATGAAATATTAAATAAT	Design primers
1131207	TTCTTCTTCTTATTTTTCTTCTTA	Design primers
1133626	TGTTTTTTTATTTATTTTTATTTTTTGTTA	Design primers
1154338	AA-AA-AT-AT-AA-AA-AC-AT-AA-AA-AT-AA	Design primers
1184058	CGA-TGA-TGA-TGA-TTA-TGA-TGA-TTA-TGA-TGA-CGA-AGA-AGA-AGA-TTA-TGA-TGA-TGA-AGA-TGA-TTA-TGA-TGA-TGA-TGA	Design primers
1184134	GATTTCGATGATGATTTTGACGATGATTTAGATGAT	Design primers
1184257	GACTTTGATGATGATTTTGACGATGACTTTGATGAT	Design primers
1184317	GATGACGATGAAGATTATGATGATGACGATTTTGACGACGAAGAT	Design primers
1203803	TTTATTATTATTTTCATTTTTATA	Design primers
1207530	TA-AA-AA-AA-TA-GA-AA-AA-GA-AA-AA-AA	Design primers
1230250	TAGTCAAAAATAATCAAAATCAATCAAAAA	Design primers
1236000	ATTTTTTATTTTTTTTTTGTTTTTTATTTATTT	Design primers
1243114	GCAGCAGCAGTAACAGCAGCAGCA	Design primers
1271315	GCTAAGGCAAAAGCTGAGGCAGAAGCTAAAGCAAAA	Design primers
1271374	AGCAGAAGCAGAGGCTAAAGCGAAAGCAGAAGCTGCTGCTAAAGCAAAAGCTGAAGCAGAGGCTAAAGCAAA	Design primers
1302097	TAGTTTCAGAAGTTTCAGTATTTTCAG	Design primers
1303271	TTTTTAATTAACTTTAAATTAATGTTTATTTAA	Design primers
1320495	AAAATAAATTAATATACAATAAAAT	Design primers
1327088	ATTTAAAAAATATTTAAATTTAAAAAATTTTGAAAAATAAAAAATAATTAA	Design primers
1330726	ATTTTATATTTTTTTACTTTGTTTT	Design primers
1330780	TTTTATAATTTTTGTAGTTTTGATAATTGTTATAGTTCTTATAATTTTTATAAT	Design primers
1343910	TATTTTATTCTATTGTATATTATAT	Design primers
1351666	ATTAATTTTGTAGTCTAAATAATTAATTTTATCATCTAGATAATTAATTTTATCATCTAGATA	Design primers
1368114	TATTCAATAATATTAAACAATATTCATTAA	Design primers
1385197	ATTTTATTGTATTTGATTATTTTTT	Design primers
1395516	TTTTTATTTTTTTTTGTTTTTTTTATTTTATTATT	Design primers
1414762	AAAATAAAGATAAAAATGAAAATA	Design primers
1436231	AGAGAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC-TCTAAAC	Design primers
1456649	TATTTTATTTATATTATTTATTGTATT	Design primers
1491189	TATAATCTTTATAGTCTTTATAATCTA	Design primers
1499628	TAATTATAATTTTTATTATAAATA	Design primers
1507368	TTTTTATATTTGTTTATAATTTTTTCTATG	Design primers
1512507	AGAAATAAAAAGAAATAATTAAAAATAATA	Design primers
1552184	TT-AT-AT-TA-AT-AT-TT-GT-AT-TT-AT-AT	Design primers
1590633	ACTCATACTCCATTTTGTTGACTAGGCACACTCCATTTTGCTGACTGGTCATACTCCATTTTGTTGACTAGACACACTCCATTTTGTTGACTAGACACACTCCATTTTGTTGACT	Design primers
1597987	TTTCTATATCTATTTTTAATTCTA	Design primers
1612400	AAAATATAAGCAAATATAAGGAATTATAAG	Design primers
1645974	TT-TA-TA-TC-TA-TA-TT-TG-TA-TT-TT-TA	Design primers
1653128	AATAATTTAAAATAATATACAATATTTTGA	Design primers
1658170	AAAAAAGTTGAGAAAAAAATCGAGAAAAAAGTTGCT	Design primers
1665545	AATA-TGAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA-ACAA	Design primers
1667137	ATATTTATATTATTATTTTTATTT	Design primers
1693173	AAAATAAAAAATAATAATATATAAT	Design primers
1695344	TGATGATGATTATGATGTTTATGA	Design primers
1701361	TTAAATATTTTTAAAAGTTTTAAAATAATT	Design primers
1701418	TATTATCGCTTATTATCACTTATTATCATT	Design primers
1714271	TATCCTCTACCATATCCTGCACCATAACCTCTGCCA	Design primers
1714717	TTT-TTT-ATT-TAT-TTT-ATT-TTT-TAT-TAT-TTT	Design primers
1714862	TACCATAACCTCTGCCATATCCTCTACCATAACCCATTCCATAGCCTC	Design primers
1721164	TAAAAAAGATAAGAAAGATAAAAAAAA	Design primers
1724339	AATAGCAATATCAATACCAATATC	Design primers
1757927	TTTAAAATAATTTATAATACTAAAAAATAA	Design primers
1768582	ATATTTTTTCTATATTATTTATATCTTTTTTAT	Design primers
1773438	ATATATTTTTTAATATTTTTACATATGTTT	Design primers
1793428	TTG-TTC-TTC-TTC-TTC-TTC-TTC-TTC	Design primers
1793814	TTTTTTCTTCATCTATTTTATTTTCATCTATTTTGTTTTCTTCTATTTTGTTTTCTTCTA	Design primers
1793875	TTTGTTTTCTTTTATTTTGTTTTCT	Design primers
1793901	CTATTTTGTTTTCTT-CTATTTTGTTTTCTT-CTATTTTGTTTTCTT-CTATTTTGTTTTCTT-CTATTTTGTTTTCTT	Design primers
1834227	AAA-CAA-AAA-GAA-GAA-CAA-AAA-GAA	Design primers
1847222	AAATAATAATTAATGATAATTAATAATAAT	Design primers
1863286	AAATGAAACTGAAAAAGAAAATGG	Design primers
1869231	TAGAGAATTAATAAAGAATTAACAAAGAATTAA	Design primers
1870394	TTTTCTTTTGCTTGTTTTACTTTTTCTTGGCTTTCTTTTTCTTTT	Design primers
1873378	TAAATTTTTATAATGTTTTATAACTTTGTA	Design primers
1881664	AAAAAAGAAAAAAATAAATAATAAA	Design primers
1898389	AGAAGAAGAAAAAAAAGAAGAAAA	Design primers
1902520	TAAA-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG	Design primers
1952376	AATACTAATTAGTAATAATTATTAATAATT	Design primers
1952656	AGAATAATTTAGAATCTTTTAGAATAGTTA	Design primers
1958747	ATAAAATATAATATAATAGAATAAT	Design primers
2000407	AAAAAATAATAAAATAAAAAAAGA	Design primers
2006718	TATAAAAAATAATAAAGAATTAAAAAAGAT	Design primers
2010894	AAAAAAAGAAATAAAGAAAATAAAA	Design primers
2043851	ATGTCTGATTCAAAG-ATAGATGATTCAAAG-ATAGATGATTCAAAG-ATAGATGATTCAAAG-ATAGATGATTCAAAG-ATAGATGATTCAAAG	Design primers
2065832	TACTATCATTACTGTCATTACTATAAT	Design primers
2082856	TTATTATAAATTATTACTAAAAATTATAAA	Design primers
2088242	TGCTGCTACTGCTGCAGCTGTTGC	Design primers
2103419	TATCTTTTATTTTTTTTCTTTCATCTTT	Design primers
2107785	TACTAATGAAATCATTACTAATAATATTATTACAAATGATATTAT	Design primers
2111741	AAGAAATGAAAAGAGATGAAATGAA	Design primers
2121417	TAATTTTAATATTAATTATAATAT	Design primers
2125830	ATA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA	Design primers
2140456	AGTAGTACTAGTAGTTGTAGCAGTAGTAGT	Design primers
2140978	ATTAG-AGTGT-AGTGT-AGTGT-AGTGT-AGTGT-AGTGT-AGTGT-AGTGT	Design primers
2164907	TA-TT-AA-AA-AA-CA-TA-AA-AA-AA-TA-TA-AA-AA-AA	Design primers
2176102	AAAAATAAATAAAAATATAAAAGATTAAAT	Design primers
2188235	TTTTTTTTGTTTTTATTTTACTTTT	Design primers
2188726	TT-TT-TA-TA-TA-CT-TT-TA-TT-TA-TT-TT-TA-TA-TT	Design primers
2221129	CCTCCAGTGCTTCCTCCGCCTGTGCTACCTCCTCCTGTACTTCCA	Design primers
2224568	ATAAAATATATTAAAATAAAATACA	Design primers
2237297	ATGATAAAGATATTGATAATGCTA	Design primers
2274731	TTTTTATTTTTTGTTTCTTTTTTTG	Design primers
2284727	AAAGGTCAGTATAGGTCATTAAAGGTGAGA	Design primers
2301029	TA-TT-TT-TA-TA-TT-TG-TT-TT-TA-TG-TT	Design primers
2305050	TT-TT-TT-TA-TT-TT-TT-CT-TT-TA-TA-TT-T	Design primers
2333522	AAAAAAAGAAAATAAATAAAAAGAA	Design primers
2350627	GGATATGGGTATTGATATTGATAT	Design primers
2358967	AATATAAAATATATAAAAAATATAGAA	Design primers
2389606	TATCATCATCATTAGCATTGTCATTATAAT	Design primers
2400530	TTTTTATTTATATTATTATTTTTT	Design primers
2463908	TTTTTTTTCTTTATTATTTTTATTT	Design primers
2487199	TTTAATAAATTTTTAAAAATTTTAATAAGG	Design primers
2499717	GAAAAAAAATCAAAAAAAAGAAAAAAACAT	Design primers
2555046	AT-AA-AG-AA-AT-AA-AA-AA-AT-AA-AT-AA	Design primers
2575299	TGA-TTA-TTA-TTA-TTA-TTA-TTA-TTA	Design primers
2575523	TATTTTTATATTATTTATAGATAATTTGTATAT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

2426

AAATA-AGACC-AGACC-AGACC-AGACC-AGACC-AGACC-AGACC-AGACC