Microsatellites /Tandem Repeats database

Genome: Butyrivibrio proteoclasticus B316

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
135552TATTAAGTAATATCAAGTAATATCAAGTAADesign primers
405697CAAAATAGAAAA-CAAAATAGAAAA-CAAAATAAAAAADesign primers
603178AATTATATAG-AATTATATAG-GATTATATAGDesign primers
789984ATAAAGCGCAAA-ATAAAGCGCAAA-TTAAAGCGCAAA-TTAAAGCGCAAA-TTAAAGCGCAAADesign primers
874875ATGAACTACTTTACATG-GTGAACTACTTTACATG-GTGAACTACTTTACATGDesign primers
942049ATCTGTAGCCACATTTGTAGCCACATTTGTAGCCACDesign primers
963247TAAGTAAGAAATAATAAGTAACAAATAATTAGTAAGAAATAADesign primers
1486455GCTTATTTATTTA-GATTATTTATTTA-GATTATTTATTTA-GATTATTTATTTADesign primers
1756559CCAACA-CCTACA-CCTACA-CCTACA-CCTACA-CCTACADesign primers
1844948GGTGTTGGATCCGGGTCAACC-GGTGTTGGATCCGGGTCAACC-GGTGTTGGATCTGGATCAACCDesign primers
1845012GTGTTGGATCTGGATCTACTGGTGTTGGGTCTGGATCTACCGGTGTCGGATCTGGATCTACTGGTGTCGGATCTGGATCTACTGGTGTTGGATCTGGATCTACGADesign primers
2252940TCTTCGGCCTTCTTTTTTTCTTCTTCAGCCTTCTTTTGTTCTTCTTCGGCTTTCTTCTTTTCTTCTTCGGCTTTCTTTTTCTCTDesign primers
2253102TTCTTTTCTTCTTCAGCTTTC-TTCTTTTCTTCCTCAGCCTTC-TTCTTTTCTTCCTCAGCCTTC-TTCTTTTCTTCCTCAGCCTTC-TTCTTTTCTTCCTCAGCCTTCDesign primers
2286924TACCACTTTTAACCACTTTTTAACACTTTTDesign primers
2338198CAATCATCCAT-GAATCATCCAT-GAATCATCCATDesign primers
2369376ATACCTT-ATACCTT-ATACCTT-ATACCTTDesign primers
2462705ACCTGATTCACCGGA-GCCTGATTCACCGGA-GCCTGATTCACCGGADesign primers
2463371CTGAT-GTGAT-GTGAT-GTGAT-GTGAT-GTGAT-GTGAT-GTGATDesign primers
2597472AGTATCCTGAGAAGTAGCCTGAGAAGTAGCCTGAGADesign primers
2655597AAAATCTCAAGAAAATCTTAAGAAAATCGCAAGDesign primers
2885005CATC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTC-TGTCDesign primers
3065587ACTGTTGTT-ACTGTTGTT-ACTGTTGTTDesign primers

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