Microsatellites /Tandem Repeats database

Genome: Butyrivibrio proteoclasticus B316

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
133130AAAAATAAAATTAAAATTAAAACTDesign primers
135551CTATTAAGTAATATCAAGTAATATCAAGTADesign primers
385509GTGGATAATGTGGATAACGTGGATTATDesign primers
405696GCAAAATAGAAA-ACAAAATAGAAA-ACAAAATAAAAA-ACAAGATAGAAADesign primers
603176ATAATTATAT-AGAATTATAT-AGGATTATATDesign primers
666645GAAAGCCTTGAAAGACTTGAAATCCTTDesign primers
778184GTAAACAGCGAGTAAACAGCAGGTAGACAGCAADesign primers
789983GATAAAGCGCAA-AATAAAGCGCAA-ATTAAAGCGCAA-ATTAAAGCGCAA-ATTAAAGCGCAADesign primers
874815TTTAAATGATGACTTTACATGGTGACTTTAAACGATGATTTTTAATGATGACTTTAAATTATGAADesign primers
874881TACTTTACATGGTGAAC-TACTTTACATGGTGAAC-TACTTTACATGATGCGCDesign primers
924414CGATAGCGACAGTGATAGCGATGGDesign primers
925072AATGCTCAGAGTAATGATGAGAGTAATGCTCAGAATDesign primers
942048AATCTGTAGCCACATTTGTAGCCACATTTGTAGCCADesign primers
963241AAATATTAAGTAAGAAATAATAAGTAACAAATAATTAGTAAGAAATAATTAGTAAGDesign primers
996261TGGCTATGGTTATGGATATGGTTATGGCTADesign primers
1014449AAAGAATAGATACAGCATAGATAGAGTATAGATDesign primers
1034070TAGCCATAGCCTTAGCTATAGCCGDesign primers
1074735AATTGAAATAAAAAGAAATAAAACGAAATADesign primers
1101774AAAGAA-AAAGAA-ATAGAA-AAAGAADesign primers
1140289GATGAATTCAAGGATGAGGAATTTAAGGATGAGGAATTCAAAGCTDesign primers
1183652CAAAAAAAATAAAAAAAATTAAAAAAAAGTDesign primers
1187074AGAAATGACAGAAACGACAGAAATGACAGAAATGATDesign primers
1205395TCAGTT-TCAGTT-TCAATT-TCAGATDesign primers
1225872AAAAGTAACAGCAAGAAAATGCAACAGCAAGCAAAAATAACAACAATADesign primers
1239309GAATTCGGAGAATACGGAGAATTGGGADesign primers
1241140AAATTATTAAGCAATTATTAAGAAGTTATTACGDesign primers
1252092ATGCTGAGGCTGATGCTCATGCAGDesign primers
1264480CCGCAACCGCCGCATCCGCCGCAACCGDesign primers
1359397TGAGTTTGATGAGTTTTATGATTTTGADesign primers
1383705CCGCTGTTGTAG-CCGCTGTTGTAG-CCGTTGTTATAGDesign primers
1486454CGCTTATTTATTT-AGATTATTTATTT-AGATTATTTATTT-AGATTATTTATTTDesign primers
1638781ACCAAGACAGAAGAAGCAAAGACAGAGGAAGCAAAGACAGAAGAGDesign primers
1708628CTGCACCTGCTCCTGAACCGGCACDesign primers
1717924TCAAGATCAAGGCCAAGATCATGADesign primers
1756555TACGCC-AACACC-TACACC-TACACC-TACACC-TACACC-TACACC-AACACCDesign primers
1844941AACAACTGGTGTTGGATCCGGGTCAACCGGTGTTGGATCCGGGTCAACCGGTGTTGGATCTGGATCAACCGGTGTTGGATCTGGATCTACTGGTGTTGGGTCTGGDesign primers
1845047TCTACCGGTGTCGGATCTGGATCTACTGGTGTCGGATCTGGATCTACTGGTGTTGGATCTGGADesign primers
1858181AA-AT-AG-TC-AA-AA-AT-AA-GC-AA-AA-AT-AG-AT-AADesign primers
1912971TTCTGTAGCAGGAGCTTCTGTAGCAGGTGTCTCTGTTGCAGGTGCDesign primers
1957682GGATCTACTGGTGTTGGGTCTGGATCTACTGGTGTAGGATCTGGATCTACCGGTTCAGGGTCTDesign primers
1958127CAGGATCAACCGGATCAGGATCAACTGGTGTTGGATCTACCGGATDesign primers
2106111GGTGTAGGATCTGGATCAACCGGTGTTGGGTCCGGATCTACCGGTGTTGGATCTGGATCTACCDesign primers
2182468ATAATAATACTAATAACAATAATGDesign primers
2252931TGTTCTTCCTCTTCGGCCTTCTTTTTTTCTTCTTCAGCCTTCTTTTGTTCTTCTTCGGCTTTCDesign primers
2253028CTTCAGCCTTCTTTTTCTCTTCTTCGGCTTTCTTCTTTTCTTCCTCGGCCTTCTTTTCCTCTTDesign primers
2253097TCTTTTTCTTTTCTTCTTCAG-CTTTCTTCTTTTCTTCCTCAG-CCTTCTTCTTTTCTTCCTCAG-CCTTCTTCTTTTCTTCCTCAG-CCTTCTTCTTTTCTTCCTCAGDesign primers
2286920TTTCTACCACTTTTAACCACTTTTTAACACTTTTTACCACDesign primers
2290211TGAGACTAGAATGAGACTTGCATGAGACCAAAADesign primers
2338196ACCAATCATCCATGAATCATCCATGAATCATCCDesign primers
2369374TGATACC-TTATACC-TTATACC-TTATACCDesign primers
2420980TCCCTG-TCTCTG-TCGCGG-TCTCTG-TCTCTA-TCTCTGDesign primers
2452331GCGGTAACGTTTTCGGTTACGTTTCCGGTAACGTTTDesign primers
2455327GATTTTCTTAAGATTTCTTTAAGATTTTCTTAADesign primers
2462671CTGAACCTGATTCGC-CAGAACCAGATTCAC-CGGCACCTGATTCAC-CGGAGCCTGATTCAC-CGGAGCCTGATTCAC-CGGAGCCTGATTCACDesign primers
2463368GTACT-GATGT-GATGT-GATGT-GATGT-GATGT-GATGT-GATGT-GATGTDesign primers
2466704ATG-ATG-ATG-GTG-ATG-ATG-GTG-ATGDesign primers
2471431ATTCCAATTACAATTACAATTCCGDesign primers
2533322CCGCCACCACCTGGTGTAGGATCGCCACCGCCGCCCGGTGTAGGATCGCCGCCACCACCTGGTGTAGGAGGCDesign primers
2567036CTGATTGTTTGTGATTATTTTTGATTGATTDesign primers
2576599AGTTCACCAGCTCCGTTATCAAGTTCACCTGCACCATTGTCAAGTTCACCTGCGCCGCTATTADesign primers
2597463AACCTGAGGAGT-ATCCTGAGAAGT-AGCCTGAGAAGT-AGCCTGAGAAGTDesign primers
2601911ACTGGAGCTTCTACCGGGGCTTCTACTGCAGCCTCTDesign primers
2655592TTAATAAAATCTCAAGAAAATCTTAAGAAAATCDesign primers
2766724AGTCAAAAACATTCAAAAATAATCATAAACDesign primers
2885003CTCA-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTGDesign primers
2926491TACTTGCCATAGTACTTTCCGTAGTACTTGCCGTAATACTTACCATAGDesign primers
3065584GTAACTGTTGTTACTGTTGTTACTGTTDesign primers
3205259TATCTTCAGCTGTATCCTCAGATGTCTCTTCAGCTADesign primers
3281938TTCTTCCTCTTCTTCCTCTTTTTCDesign primers
3303569GTTGTCTCAGTTTCTGCTGCCCCAGTTTCTGTTGTCTGTGTGTCTDesign primers
3540166CTCCATTTTATTAAAATCATTTTTATTAAAATCCGTTTTAATAAADesign primers

Please help us improve this resource by reporting problems, suggestions etc.