Microsatellites /Tandem Repeats database

Genome: Arthrobacter arilaitensis Re117

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
190302CTTTGGCTTCGGCTCTGGCTTAGGDesign primers
190327TCAGCCGTCTTGGTTGGCTTAGGCTCAGCGGACTTCGTTGGCTTTGGCTCGGCCGTTTTGGTTGGCTTAGGCTCAGCAGTCTTCGTTGGCTTAGGTTCGGCCGTTTTGGTTGGCTCAGGTTCGGCCGTCTTAGTCGGCTTAGGTTCGGCCGTCTTGGTTGGCTTTGGCDesign primers
218532GTC-ATC-GTC-GCC-GTC-ATC-GTC-GTC-ATC-ATC-ACC-GTA-GTC-GTC-ATC-GTC-ATC-GTC-GTC-ATC-GTCDesign primers
218674GGCTTG-GGCTTG-GGTTTG-GGCTTC-GGCTTADesign primers
299771CGGTCGGGGTCGGGGTCGCGGTGGDesign primers
307301GTGCTCATGGGCGTGCTCGTGGTCGTGCTCGTGGTCDesign primers
308588AGCAGCGGCAGCAGCACCAGCAGCDesign primers
398046AGCCACTAGGCACTAGCCGCTAGGCACTDesign primers
472509AATGCCACTGCCAATGACACTGCCDesign primers
615471CATGGGTGGCATGGGCGGCATGGGCGGDesign primers
680754GCAGCAGGCAGCACC-AAAGCAGGCAGCACC-AAAGCAGGCTGCACC-AAAGCAGGCTGCACC-AAAGCAGGCTGCACCDesign primers
867984AGCCACCAAACCAGCGGCCGCCGCTGCTAAACCAGCGGCCGCCGCTGCTAAACCAGCGGCCGCDesign primers
868114CCAGCAGCTGCTAAGCCCGCGGCTGCAAAGCCTGCGGCTGCAAAGDesign primers
961394GAGGAAGAAGAGGAAGAAGAACAGGAAGAAGAAGAGDesign primers
988193ACTGCGTCC-GCTGCGTCC-GCTGCGTCCDesign primers
1080227TTGGCATTGCCATTGGAATCGGCADesign primers
1141169CGCCGCTAAGCCAGCAGCTGCGAAGCCAGCCGCTGCCAAGCCAGCDesign primers
1141312CAGCTCCAG-CTGCGCCAG-CTGCGCCAG-CTGCGCCAG-CTGCGCCAG-CTGCTCCAGDesign primers
1186320GGCTCGGCTGTTGGTTCCGCTGTTGGTTCCGCTGTTGGCTCAGCCGTTDesign primers
1186470GCTGTTGGCTCAGCTGTGGGCTCTTCTGTTGGTTCADesign primers
1190211AGAAGATGAAGAAGAAGCCGAAGADesign primers
1279352GCCGCTGGCGAACAGCTGGCGAACCGCTGGCGGDesign primers
1293347GCTGATGCAGATGCCGATGCAGATDesign primers
1406526ACCGCCGCGAGCGCAACAACGATCGCAATGAGCGCAACAACGATCGCAACGAGCGCAACAACGDesign primers
1406710CGAACGCCGCGAACGCAACAACGACCGCAACGATCGCAACAACGACCGCAACGATCGCAACAADesign primers
1702813CAAGGCGAAGGCCAAGGGCAAGGGDesign primers
1743140ACTTCGACTCCTACCGAGGAACCG-ACTGCGGAGCCTACCGAGGAACCG-ACTGCGGAGCCTACCGAGGAACCG-ACTGCGGAGCCTACCGAGGAACCGDesign primers
1914833CGGCCACAGCCATGGCCATGGCCADesign primers
1977979GGCCAA-GGCCAA-GGGCAA-TGCCAADesign primers
2248589CCAAGCCCGAGCCCAACCCCAATCDesign primers
2309779GCTCCTGCCGCTCCAGCCGCTCCAGCCDesign primers
2378933AAACATCAAACAGCATCAAATGACATCAAADesign primers
2417748GGC-GGC-GGT-TTC-GGA-GGA-GGT-GGC-TTC-GGA-GGC-GGC-GGT-GGC-GGCDesign primers
2520628GTGTGC-GTGTGC-GTATGC-ATGTGCDesign primers
2520688TAGTTTCGGACCGCGGTACTTTCGGACTCCGGTAGGTTCGGACCGCGADesign primers
2637843ACCACGACCGCGGCCTTCGCCACGTCCACGGCCTTCACCACGACCGCGGCCTTCDesign primers
2726160CCCTTG-CCTTTG-CCCTTG-CCCTTG-CCTTTG-CCCTTG-CCCTTGDesign primers
2978505GTGTTCACATCC-GTGTTCACATCC-GTGTTCGCGTCC-GTGTTCGCATCADesign primers
2978601GTGTTCACATCC-GTGTTCACATCC-GTGTTCGCGTCC-GTGTTCGCATCADesign primers
2978695CAGTGTTCACAT-CCGTGTTCGCAT-CGGTGTTCGCAT-CGGTGTTCGCATDesign primers
2978755CAGTGTTCACATCCGTGTTCGCATCGGTGTTCGCATDesign primers
2979445CAGTGTTGTCCGCAGTGTTGTCGCCAGTGTTCTCAGDesign primers
2979558TTCGCATCCGTGTTGGCATCGGTGTTCGCATCAGCGDesign primers
2979603GTGTTCACATCGGTGTTCACATCCGTGTTGGCATCGGTGTTCGCATCADesign primers
2979661CAGTGTTCACATCGGTGTTCGCATCCGTGTTGGCATCGGTGTTCACATCCGTGTTGGCATCGGTGTTCGCATDesign primers
2979774TTCGCATCCGTGTTGGCATCGGTGTTCACATCCGTGTTGGCATCGGTGTTCGCATCAGCGDesign primers
2979870TTCGCATCCGTGTTGGCATCGGTGTTCGCATCAGCGDesign primers
2979942TTCGCATCCGTGTTGGCATCGGTGTTCGCATCAGCGDesign primers
2980014TTCGCATCCGTGTTGGCATCGGTGTTCGCATCAGCGDesign primers
2980066CATCGGTGTTCGCGTCAGTGTTCGCATCCGTGTTGGCATCGGTGTTCGDesign primers
2980128GCAGTGTTCACATCGGTGTTCACATCGGTGTTCACADesign primers
2980201CAGTGTTCACATCGGTGTTCGCATCCGTGTTGGCATCGGTGTTCGCATCAGTGTTATCATCAGTGTTCACATCAGTGTTCGCATCAGTGTTATCATCAGTGTTCACATCAGTGTTCGCATCAGTGTTCGCATCAGTGTTGGCATCAGTGTTCGCATCAGTGTTCTCATCAGTGTTCACATCAGTGTTCACATCAGTGTTCGCATCAGTGTTCGCATCAGTGTTCGCATCAGTGTTCGCATCAGTGTTCTCATCAGTGTTCACATCAGTGTTCGCATCAGTGTTCGCATCAGTGTTGGCATCAGTGTTCGCATCAGTGTTATCATCAGTGTTCACATCAGTGTTCGCATCAGTGTTCGCATCAGTGTTGGCATCAGTGTTCGCATCAGTGTTATCATCAGTGTTCACATCAGTGTTCGCATCAGTGTTCGCATCCGTGTTGGCATCGGTGTTCGCATCAGTGTTATCATCAGTGTTCACATCGGTGTTCGCATCAGTGTTCGCATCCGTGTTGGCATCGGTGTTCGCATCAGTGTTATCATCAGTGTTCACATCGGTGTTCGCATCAGTGTTCGCATCCGTGTTGGCATCGGTGTTCGCATDesign primers
2980815GTGTTCACATCGGTGTTCGCATCCGTGTTGGCATCGGTGTTCGCATCADesign primers
2980873CAGTGTTCACATCGGTGTTCGCATCAGTGTTGGCATCGGTGTTCGCATDesign primers
2980933CAGTGTTCACATCGGTGTTCGCATCGGTGTTCGCATDesign primers
2980983GTGTTCACATCGGTGTTCACATCCGTGTTGGCATCGGTGTTCGCATCADesign primers
2981070TTCGCATCCGTGTTGGCATCGGTGTTCGCATCAGCGDesign primers
2985670TGCGGTTCTGCCCAG-TGCGGTTCTGCCCAG-TGCGCTTCTGGCCCGDesign primers
3198308CGGGTA-CGGTTG-CGGTTG-CGGTTG-CGGTTG-CGGTTGDesign primers
3404087TGAAAGTTTGCAAGTTTGCAAGTTDesign primers
3433862GCAG-TCGA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTA-TCTADesign primers
3461200GCACCG-GCAACG-GCAACG-GCACCGDesign primers
3603196GTTGGTTCCGGAGTCGGCTCGACC-GTAGGCTCTTGAGTCGGCTCGACC-GTAGGCTCTTGAGTCGGCTCGACC-GTAGGCTCTTGAGTCGGCTCGACC-GTAGGCTCTTGAGTCGGCTCGACC-GTAGGCTCTGGAGTCGGCTCGACCDesign primers
3603487GGCTCGACCGCAGGCTCCACCGTAGGCTCCACCGTADesign primers
3603532GTTGGTTCCGGAGTCGGCTCGACCGTAGGCTCTTGAGTCGGCTCGACCGTAGGCTCTTGAGTCGGCTCGACCDesign primers
3603605TAGGCTCCACCGTAGGTTCTGGAGTCGGCTCCACCGTAGGTTCTGGAGTCGGCTCCACCGTAGGTTCAGCGGDesign primers
3603902CCGTAGGCTCCACCGTAGGTTCTGGAGTCGGCTCCACCGTAGGTTCTGGAGTCGGCTCCACCGTAGGTTCAGDesign primers
3614242ACAGTCGGCTCGGTCGGATCCACAGTCGGCTCAGTCGGGTCAACAGTAGGTTCCGTAGGATCCACAGTCGGCTCAGTCGGATCCACAGTCGGTTCCGTAGGATCCACAGTCGGCTCAGTCGGATCCACAGTCGGCTCAGTCGGATCCACAGTCGGCTCAGTCGGATCCACAGTCGGCTCGGTCGGCTCADesign primers
3614433AGGCTCAGTCGGGTCAACAGTAGGTTCCGTCGGATCCACAGTCGGCTCGGTCGGCTCAACAGGDesign primers
3671220GCCGCGGCGCGCCCCGACGCGCTGCDesign primers
3682458GGCGGACGGGTCGGACGGGTCGGACGGDesign primers
3770581ATTCAAACACACTCAAACATATTTGAACACDesign primers
3798433GATCAGTATCAGGATCAGGATCATDesign primers
3824635GGCCAAGGCGAAGGGCAAGGCCAGDesign primers

Please help us improve this resource by reporting problems, suggestions etc.