Microsatellites /Tandem Repeats database

Genome: Lactobacillus plantarum subsp. plantarum ST-III

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
179262ACTACG-AGCAGT-AGCAGT-AGCAGT-AGCAGT-AGCAGT-AGCAGT-AGCAGT-AGCAGT-AGCAGT-AGCAGT-AGCAGTDesign primers
181477TCGAACCAAGTGAACCGAGCGAACCAAGCGAACCGAGTGAACCAAGTGAGCCGAGCGAACCGAGTGAACCAADesign primers
181551GAGCCGAGCGAACCGAGCGAACCAAGTGAACCGAGCGAACCAAGTGAACCGAGCGAACCAAGCGAACCGAGCGAACCGAGCGAACCAAGCDesign primers
443296AAATTAAGTTGAATTAAATTAACTTDesign primers
534438AGTCGTGGTTTGATCTTG-AGTCGTGGTTTGATCTTG-AGTCGTGGTCTGGTCCTGDesign primers
534558TGAACT-TGAACT-GGAACT-TGAGCTDesign primers
724495AA-AA-TA-TA-AA-AA-TA-CA-AA-AA-AA-TADesign primers
789933TTTCGA-TTTTGA-TTTTGA-ATTCGADesign primers
1110134TAAGAATTATAAGAATGATAAGAACTADesign primers
1128993AATGTTGAAGAATTTTTGAAGAAATCTTCAAGADesign primers
1159266GACGGCGACAGTGATTCGGATAGCGACAGTGATTCGGACTCTGACAGTGATTCGDesign primers
1159329AGCGACTCGGACTCGGAC-AGCGACTCGGACTCGGAC-AGTGACTCCGACTCCGACDesign primers
1159491TCAGACAGCGATTCAGACTCCGATTCTGACAGTGATDesign primers
1159569TCAGACAGTGACTCGGATTCGGATAGTGATTCGGATTCAGACAGTGACTCCGACDesign primers
1159629AGTGATTCCGACTCAGACAGCGATTCTGACTCAGACAGCGATTCGGACTCGGACDesign primers
1159689TCCGATTCTGACAGTGATTCCGACTCGGATAGTGATTCGGATTCGGACAGCGATDesign primers
1159827TCAGATTCCGACAGTGATTCCGACTCCGATAGTGATTCGGATTCCGACAGCGATTCGGATTCGGATAGTGATTCAGACTCGGACAGCGATTCCGATTCCGACAGTGATTCGGACTCCGATAGTGATTCGGATTCCGACAGCGACTCGGACTCCGATAGTGATTCCGATTCTGACAGTGACTCGGACTCCGACAGTGATDesign primers
1160087CGACAGTGACTCAGATTCCGACAGCGACTCAGACTCGGACAGTGACTCCGACTCGGACAGCGACTCGGATTCDesign primers
1160193AGTGATTCGGATTCAGACAGTGATTCCGACTCCGACAGTGATTCCGACTCCGACAGTGATTCTGATTCTGATDesign primers
1160268GACAGTGACTCAGACTCGGACAGCGACTCAGATTCCGATAGTGATTCGGACTCGDesign primers
1160325AGTGATTCAGATTCCGACAGCGATTCAGACTCAGACAGTGACTCAGACTCGGACDesign primers
1160382GACTCCGACAGTGATTCGGACTCCGACAGCGATTCGGATTCGGATAGTGATTCGGACTCCGACAGCGACTCGGATTCCGATAGTGATTCCGACTCGGACAGCGACTCGGATTCCGATAGTGATTCGGACTCCGACAGCGACTCGGATTCCGATAGTGATTCCGACTCAGACAGTGATTCTDesign primers
1160568GACAGTGACTCAGACTCGGACAGCGACTCAGATTCGGATAGTGATTCTGACTCGDesign primers
1160687TGACTCCGACAGTGATTCTGACTCGGATAGTGACTCGGATTCTGACAGTGATTCGGACTCCGACAGTGACTCAGACTCTGATAGTGATTCGGATTCCGATAGTGATTCDesign primers
1160820GATAGTGACTCGGACTCAGACAGTGATTCCGACTCAGATAGTGATTCGGATTCCDesign primers
1160891CGACAGTGATTCCGACTCAGACAGTGATTCCGATTCCGACAGCGATTCGGATTCGGATAGTGATTCCGATTCCGACAGTGATTCCGATTCCGATAGTGACTCCGATTCDesign primers
1161036GACTCGGATAGTGATTCGGATTCCGACAGTGATTCGGACTCGGATAGTGACTCGGATTCCGATAGTGATTCGGACTCGGATAGTGATTCCGATTCGGACAGTGATTCGDesign primers
1161150GACAGTGACTCCGACTCTGATAGTGATTCCGATTCTGACAGTGATTCTGACTCCDesign primers
1161618GACAGTGACTCCGACTCGGATAGTGATTCAGACTCGGATAGTGATTCCGACTCTGACAGTGATTCCGACTCTGACAGTGATTCCGATTCTGACAGTGATTCCGACTCGDesign primers
1161825AGTGATTCCGATTCGGACAGTGATTCGGACTCGGACAGCGATTCGGACTCGGACDesign primers
1161882GATTCGGACTCTGACAGTGATTCCGACTCGGATAGTGATTCGGATTCCGACAGCGACTCAGATTCTGACAGTDesign primers
1161957TCGGATTCGGATAGCGATTCGGATTCCGACAGCGACTCGGATTCCGACAGTGATTCGGACTCGGATAGTGATDesign primers
1162110GATAGTGATTCCGATTCGGACAGCGATTCCGATTCCGACAGTGATTCGGACTCGDesign primers
1162165ACAGCGATTCGGACTCGGACAGTGATTCGGACTCGGACAGCGACTCGGATTCCGATAGCGATTCCGACTCTGATAGTGATTCGGACTCGGACAGCGACTCAGACTCAGDesign primers
1162317TCCGATTCGGACAGCGATTCCGACTCAGACAGTGATTCCGATTCGGATAGTGATTCCGATTCGGACAGTGATTCAGACTCGGATAGCGATDesign primers
1162605TCCGATAGCGATTCAGACTCTGATAGTGATTCGGACTCGGACAGCGACTCAGACDesign primers
1162745TGACTCCGATTCGGACTCGGACAGCGATTCGGACTCGGACAGCGATTCGGACTCDesign primers
1162851TCAGACAGCGATTCCGATTCTGACAGTGATTCGGATTCGGATAGCGATTCGGATTCCGACAGCGACTCGGATTCCGACAGTGATTCCGACDesign primers
1163007TCGGACTCAGATAGTGATTCCGACTCGGATAGTGATTCGGATTCCGACAGTGATDesign primers
1191401TAATGGGGCATATTGGGGCCGAATGGTGCADesign primers
1364442GTGATAGCGATAATGATATTGATADesign primers
1396657GATGAAGACGAAGATGAAGCTGAADesign primers
1828987ACCTT-ACCTT-TACTA-ACCTT-ACCTA-ACCTA-ACCTT-ACCTA-ACCTADesign primers
1829033GCGGTCCATTGTCCGTCCATTGGTTGTCCATTGDesign primers
1839614TAGAAAAGGCTAAAAAGGGCTAGAAAAGAADesign primers
2012086ATCTTCATCATCACCTTCATCATCDesign primers
2031102TTGTTGATGTTGTTGTTGTTGTTTDesign primers
2170102AAAGTTCGGTTAAAGTCCGGTTTGAGTTCGGTTDesign primers
2263315CCTGGTTCGCCTGGTTTGCCTGGTTGGDesign primers
2263456CCTGGTTCACCTGGTTTACTTGGTTCADesign primers
2455876ATTTCAGGG-GTTTCAGGG-GTTTCAGGG-GTTTCAGGGDesign primers
2712776GTACTGCCACTG-CTATTGCCACTG-CTATTGCCACTG-CTATTGCCACTGDesign primers
2712844ACTGCTACTGGTACTGGTACTACTDesign primers
2772507CAACCGAGCCCGGCACCACAACCAAACACGGCACCACAACCGAGCCCGGTGCCGCAGCCAAACCCGGCACCADesign primers
2781058GACTCAGATTCAGAATCAGATTCAGACTCTDesign primers
2797664CAAGCTTATCTAACCTTATCTCAGCTTATCDesign primers
3150040TAGAATCAATTAGAAATAATTAGAATAATTDesign primers
3170690ATTACTAATACTATTACTAGTACTDesign primers
3182533CTAATACTGGTTGCACTGTTCGCT-GCACTACTGGTTGCACTGTTCACT-GCACTACTGGTTGCACTGTTCGCT-GCACTACTGGTTGCACTGTTCGCT-GCACTACTGGTTACACTGTTCGCT-GCACTACTGGTTACACTGTTCGCT-GCACTACTGGTTACACTGTTCGCT-GCACTACTGGTTACACTGTTCGCT-GCACTACTGGTTACACTGTTCGCT-GCACTACTGGTTGCACTGTTCGCTDesign primers
3236770TTGCCTTATTTCCGTTTC-TTGCCTTATTTCCGTTTC-TTGCCTTTTTTCTTTTTCDesign primers

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