Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Rhodomicrobium equis 103S

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
25462	GGTCGTGGTGGTCGTCGTGGTCGG	Design primers
29678	GGGCGCGGGCGTCGGCGCGGGTGC	Design primers
29780	CGGTGT-CGGGGT-CGGGGT-CGGCGT	Design primers
32147	CTGCTGGTCGTAGCCCTGCTGGTACTCGCCCTGCGGCTGGTAGCC	Design primers
32294	GTAACCGCCCTGCTGCGGGTAACCACCCTGCTGGGGGTAACCGGCGTCCTGCGG	Design primers
32420	CTGCTGGTAGCCGCCCTGATCCTGGTAGCCGCCCTGATCCTGGTATCCGCCCTG	Design primers
59271	AACGGTTCGAGCGGTTCGAGCGGTTCG	Design primers
126113	GCCACGGCTACGACCACGACCACG	Design primers
131125	CGACGTCGAGGTCGACGTCGACAT	Design primers
154763	CCCAGGTTCACCGCAGGTCCACTCGAGGTTCAC	Design primers
160134	CGACCCAGC-CGACCCAGC-CGACCGAGC	Design primers
200446	GTACGGGCACGGCTACGGGCACGG	Design primers
201605	CTGCCCCCGTTGCCCCCGCTGCCGCCG	Design primers
207894	TGCTGTCGCTGTTGCTGTTGCGGT	Design primers
248367	AGCGCG-ATCGCG-ATCGCG-ATCGCG	Design primers
270114	GCCGGACCGAAGAACACT-GCCGCACCGAACAGCACT-GCCGCACCGAACAGCACT-GCCGCACCGAACAGCACT-GCCGCACCGAACAGCACT	Design primers
304769	CGCCGACGGCGATGCCGACGCCGG	Design primers
360955	CCGGGCGGAGGCGGATAGCTGCCCGGTGGAGGCGGGTAACTGCCGGGCGGAGGCGGGTAGCTG	Design primers
367189	GCGACGGAGGTCACGGC-AAGACGGAGGTCACGGC-AAGACGGAGGTGACGGC	Design primers
389043	GCTCAGCCGGAACCACAG-CGGCAGCCGGAACCACAG-CGGCAGCCGGAACCACAG-CGGCAGCCGGAACCACAG	Design primers
486282	TCGCCATCGCCGTGGCCATCGCCA	Design primers
572850	GCAGCCAAGAAGGCGCCGGCCAAGAAGGCCGCGGCGAAGAAGTCG	Design primers
582920	TCGCGGCCGGCGACGCGGCCGGCTTCGCGGCCGCGG	Design primers
619951	CCCGCGCCCGAACCTGAGCCCGAACCTGAGCCCGAA	Design primers
649437	GAAGACACCGAAGACCCCGAAGACACC	Design primers
714094	CGATCCCGAACCCGATGCCGCTCC	Design primers
778639	GCTGACCCCGATCTGATCCCGATCTGACCTCGA	Design primers
793443	CGACGTCGACGGCGACCTCGACGT	Design primers
811550	TGGCAG-GTGCAG-GTGCAG-GTGCAG-GTGCAG-GTGCAG	Design primers
811603	GGCGCCGGCGCAGGTGCCGGCGCG	Design primers
882476	CGTCCCGGGCTCCTCCGGGGCTCGTTCTGGGCT	Design primers
888451	CTGCGTCTCGGGAGCCCACTG-AGTCGTCTCGGGAGCCCACTG-AGTCGTCTCGGGAGCTCACTG	Design primers
926229	GTCGGTGTAGGTGCCGGTGTCGTT	Design primers
961999	GTCGGCGCCGGCGTCCGCGTAGGC	Design primers
973516	GGCGTCGTCGTCGGCGCCGGCGCC	Design primers
978994	GTC-GAC-GTC-GCC-GCC-GAC-GTC-GCC	Design primers
995506	GCCCGCCG-GCCCGCCG-GCCCGCGG	Design primers
1038469	GGGGA-GGGGA-GGGGA-GGAGA-GGGGT	Design primers
1054845	CGGCGGCGGGGGAGGCGGCGGCGC	Design primers
1056140	GGGATCGCGATCGCGATCGGGACC	Design primers
1107901	GGTGGGCATCGTCGTGGTCGGGATCATCGTGATCGGCAACGTCGT	Design primers
1135105	CCCTCTGAA-CCCTCTGAA-CCTTCTGAA	Design primers
1194731	CAGGGTTACGCGCCGCCGCAGGGCTACGCGCCGCAGCAGGGGTATGCGCCGCAG	Design primers
1204885	CCCGTCGCCG-CCCGTCGCCG-CCCGTCGGGG	Design primers
1281349	GGCCGACGCCGATGCCGAGGACGA	Design primers
1421731	TGGTCGGCCAGCTGGACGGCCAGATTGTCGGCCTGC	Design primers
1444746	GCGAAT-GCCGAA-GCCGAA-GCCGAG-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA	Design primers
1492863	CGCCGATGTGGTCGCCGACGTCGTCGACGAGGTGGT	Design primers
1501411	GCGCTCGCGCTCGCGATCGGGCTC	Design primers
1511730	CGCCCGCGCGCGTGCCCGCGGCCG	Design primers
1526984	GGTGCCGCAGCCTTCGGGGCCGGGGCCTTCGGTGCCGCAGCCTTG	Design primers
1552048	GCCGTCGCGGTCTCCGTCGCCGCC	Design primers
1574658	CGGATTTCACGGGCACGGGTTTCACGGGCAAGGACTTCACCGGCA	Design primers
1581128	GCGCGAGGGCGAGCGCGGCCGCGA	Design primers
1587000	CCGTGGACTGCGAAC-CCGTGGACTGCGAAC-CCGTGGACCGTGACC	Design primers
1603368	CGATGCGGCGCTGCGGCGATTCGG	Design primers
1641469	GGGAAGCCTGGGAAGCTTGGGAAGCCT	Design primers
1773206	CGGCGGCGGGGGTGGCGGCGGGGGTGGCGGCGTCGGCGGCGG	Design primers
1804729	CGTCGACGTCGCCGGCGAGGTCGA	Design primers
1833658	CTGGTCCGGGTCCCGGTCCTCGTC	Design primers
1840743	CGA-CGA-CGG-CGA-CGA-CGG-CGC-CGA	Design primers
1878043	GCCGAC-GCCGTC-GCCGTC-GCCGAC	Design primers
1891084	CCCGCCGTCATACCGCTGTCATACCGCCGTCAG	Design primers
1948405	GCGATTTCGGCGGCGGCGATTTCGGTGGTGGCGATTTCGGTGTAG	Design primers
1983795	CCTCGCCGCGCTCGCCGCCCTCGCCGC	Design primers
1988229	CCG-CCG-CCA-CCG-CCG-CCG-CCG-CCG	Design primers
1988691	GGCTTCGGTGTCGTGGTGCTCGGTGTCGTGGTGCTCGGTGTCGTG	Design primers
2020455	GATGCCACCGCGGCGAGCCGCGCAGTCGTCACCGCGGCGAGCCGCGCAGAGTGAACCGCGGCGAGCCGCGCA	Design primers
2046978	CCATGACGTCAGCATGACGCCATCGTGACGTCA	Design primers
2054638	CGGCGCCGGAACCGGAGCCCGAACCCGAGCCGGAAC	Design primers
2136451	GGTGGTCTTCTTGGCCGCGGTCTTCTTGGCGGCGGCCTTCTTCGC	Design primers
2136497	GGAGCCTTCTTGGCGGCGGCCTTCTTGGCGGGCGCCTTCTTGGCG	Design primers
2151926	GAACGTGAACATCAGCGTGAACATGATCGGGAACAT	Design primers
2230239	TCGGATG-CCGGATG-CCGGATG-CCGGATG-CCGGATG	Design primers
2274416	CTACACCTCGGACTACACATCGGACTACGGCTCGGA	Design primers
2365149	TCTCCATGTGAGACG-GCTCCATGTGAGACG-GCTCCATGCGAGATG	Design primers
2371254	GCGGCGGCTGCGGCGGCGGCGGCC	Design primers
2423679	GCCGTGCCCTGCCGCGCCGTGCCGA	Design primers
2430380	CCGCCGACTCCGCTGACTCGGCCGACT	Design primers
2557483	GCTGTGGGTGCTGTGGGAGCTGCGGGT	Design primers
2686709	ACG-TCG-AAG-TCG-ACG-ACG-ACG-GCG	Design primers
2741042	GCGGCGATCGCGGTGATCGCGGCGATCGCGGTGATC	Design primers
2757317	GGCAAGGGCAAAGGTAAGGGCAAG	Design primers
2779947	TCGTGC-CCGTGC-CCGTGC-CCGTGC	Design primers
2780689	CCCGTACGAACATGTTCGGTACGGACATGTTCGTTACGAACATGT	Design primers
2794619	ACCCGGATCCGGACCGGGACGCGG	Design primers
2893606	GCGGCGGCGGTGGCCGCGGCAGCG	Design primers
2925524	TCCGCG-GCCGCG-GCCGCG-GCCGCG	Design primers
2949527	CGTCGTCGTCCTCGCCGTCCTCGT	Design primers
3017775	TCGCGGTGGCGGTCGCCGTCGCGA	Design primers
3023441	GCTCCGGCTCCCGCACCCGAGCCC-ACCCCGGCTCCCGCACCCGAGCCC-ACCCCGGCTCCGGCACCCGAGCCC	Design primers
3023753	GCCGCCGCTCCGGCTGCAGCCGCCCCCGCTGCCGCCGCTCCGGCC	Design primers
3165907	CTGCGTGGCGTCCTCGGCCGCCGGCGCTGCTTCCTCGGCCGCCGGCGCTGCTTCCTCGGCCGC	Design primers
3167731	GCGACG-GCGACG-ACGACG-GCGCCG	Design primers
3190741	GCGACGGCGGCGACTTCGGCGGCGGGGACTTCGGCGGCGGCGACTTCGGCGGCGGGGACTTCGGCGGCGGGGACT	Design primers
3224082	CCACGAGGGCGGCGACGAGGCCGGCGACGAGGCCGG	Design primers
3283502	TTCTTGCCCTTCTTCCCCTTCTTGCCG	Design primers
3290443	CAGCCTCCGGCTCGACCACCGGCTCCGGCTCGACCACCGGCTCCGGCTCGACGA	Design primers
3290526	GCCGGCTCCGGCGCAGGCTCCGGC	Design primers
3293653	CGGCCGCCGCCGCGGCGGCGGCAG	Design primers
3309693	GGTCGCGCTCGCGGCCGCGGGCGC	Design primers
3334319	CTTGGCCGCAGTCTTCTTCGCAGCCGTCTTCTTGGCGGCGGTCTTCTTGGCAGCCGTCTTCTTGGCGGCCTTCTT	Design primers
3358699	GCGGCGCGGGGCGGCCCGGCGCCGC	Design primers
3439624	CGGGGC-CGCGGC-CGCGGC-CGCGGC	Design primers
3474578	GCTGCTGCTTCTGCTGCTGCTGCG	Design primers
3516491	CGT-CGC-CGT-CGT-CGC-CGC-CGT-CGT	Design primers
3562840	GGCGTCGACGTCGCCGTCGTCGTC	Design primers
3636041	CTCGACCACCGGTACGACCACCGGCACGACGACCGG	Design primers
3638120	GGCCGCGGGCGCAGCCGCGGGCGC	Design primers
3640937	GAGGACGAGGAGCAGGACGAGGAG	Design primers
3706260	GGCACGGCGGGAACGGCGGGAACGGCG	Design primers
3720659	GTGGGC-GTGGCC-GTGGCC-GTGGTC	Design primers
3734441	CCCGGC-ATCGGG-CTCGGG-CTCGGG-CTCGGG-CTCGGG-CTCGGG-CTCGGG-CTCGGG	Design primers
3755460	CTGCCGCCTGTTCCG-GGGCCGCCTGTTCGG-GGGCCGCCTGTTCGG-GCGCCGACTGTTCCG	Design primers
3755764	GCACTCGCAATCGCACCCGCACCC	Design primers
3763004	CTGGCA-CTGGCA-CCGGCA-CTGGCA-CTGGCA	Design primers
3932967	GCCGACGGCGACGCCGACGCCGGC	Design primers
3986549	CCCCGGAGGCCACCGGAGGTTCCGGGAGGC	Design primers
4010961	GCCGAAGCCGCCGAGGCCGCGGAAGCCGCCGAGGCC	Design primers
4020140	ACTTGTGATCGTCGGCCTTGCGGTCGTCGGCCCTGTGATCGTCGG	Design primers
4020337	TTCGCGTCCTTCGAGTCCTTCGAGTCC	Design primers
4020496	GCCTTCGTCTCGGGAGTCGTCGCCTCGGGAGCCTGCGTGTCGGGAGCCTGCGTGTCGGGAGCCTGCGTGTCGGGG	Design primers
4032622	CGAGG-CGAGG-CGAGG-CGCGG-CGACG	Design primers
4032957	GCGGCGGCA-CCGGCGGCA-CCGGCGGCA	Design primers
4040854	TTCGATCCCCTGCGAACCCCTTCGCACCCC	Design primers
4043146	CAGCCGAGACTCAGCCGTGCCTCACCCGAGACT	Design primers
4044413	ACGATCGGGCCACGATCCGGGCACGATCGGAAC	Design primers
4114022	GACGTCGACGCCGCCGACGTCACGGCCGCCGACGTCGCCGCGGCA	Design primers
4148167	CCAGCGCCAGCCACAGCGCCACCG	Design primers
4163501	CCTGCGCCGGCCCGCGACGGCCTTCGCCGC	Design primers
4229980	CGTACGCCGGGTACGCCTGCGTCGGGTACGCCTGCGTCGGGTACG	Design primers
4253297	ATCGACGTCTCCCCCACCGACGTCTCCGACATCGACGGCTACCGC	Design primers
4261765	CCGCCGTCGCCGCCGGCGGCGCCGCCACCG	Design primers
4262638	GGCGGCCGCGGCGGTGGCGTCGGC	Design primers
4279241	CGTCGGTGGAGTCGTCGGCGGTGTCGTCGGTGCGGT	Design primers
4287067	CGACGCCGACGGCAACGCCGACGA	Design primers
4289066	GTCGAGGCACCCGCTGCCGAGACTCCCGCTGCCGAGGCGCCCGCA	Design primers
4294868	GGACAC-GGACAC-GGGCAC-GGGCAC	Design primers
4295362	GATCGTCGCCGCGTTCGTCGTCGCGATCGTCGCCGT	Design primers
4350905	GC-GA-GA-GG-GG-GC-GG-GA-CG-GG-GC-GG-GC-GG-GG	Design primers
4412476	GCGATCGCCATCGCGTTCGCGTTC	Design primers
4444996	TGACCG-TGGCCG-TGGCCG-TGGCCG	Design primers
4491552	TCGGCGTTGGCGTCGGCGTCGTCG	Design primers
4506630	CTTCGGGGGCTTCCGGGGTTTCGGGGG	Design primers
4597255	GCGGGCTTCGGCGCGGGAGCCGCCGCGGGCTTGGGCGCGGGAGCCGCTGCCGGCTTGGGCGTGGGGGCCGCCGCGGGCTTCGGCGCGGGAGCCGCG	Design primers
4750167	TGTTCGCGTTCGTGTTCCTGGTCG	Design primers
4789394	CGACCGCGGCCGCGAGCGCGAACG	Design primers
4809202	CCA-CCA-CGA-CCA-CGA-CCA-CGA-CCA	Design primers
4825789	GTGCGGATGCGGGTGAGGGTGCGA	Design primers
4835126	GTGGCCGTGACCGTGGCCGTGGCT	Design primers
4864459	GCAGCAGCGGCATCAGCAGCAGCG	Design primers
4914160	GGCGC-CGCAC-GGCGC-GGCGC-GGCGC-GGCGC	Design primers
4957608	ACCCGGCCCGGCCCGAGCCGACCCT	Design primers
4980489	TCAGGGGGCGGCCGGGGA-CTGGGGGGCGGCCGGGGA-CTGGGGGGCGGCCGGGGA	Design primers
5007337	ACCACCACCATCACCATCACAACC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

25462

GGTCGTGGTGGTCGTCGTGGTCGG