Microsatellites /Tandem Repeats database

Genome: Odoribacter splanchnicus DSM 20712

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
170104GAGTTGCTGAGTTATTGAGTTGCT-GAGTTGCTGAGTTATTGAGTTGCT-GAGTTGCTGAGTTATTGAGTTGCT-GAGTTGCTGAGTTATTGAGTTGCTDesign primers
233766AAAAGCTAGAGGCT-AAAAGCTAGAGGCT-AAAAGCTAGAGGCTDesign primers
336575TAACTCTG-TAACTCTG-TAACTCTGDesign primers
424865CTCTATAACTCAGTAA-CTCTATAACTCAGTAA-CTCTATAACTCAGTAADesign primers
659365CTGAGTTT-CTGAGTTT-CTGAGTTTDesign primers
1088278AACTCAGTAACTCAGCAACTTAGC-AACTCAGTAACTCAGCAACTTAGC-AACTCAGTAACTCAGCAACTTAGCDesign primers
1090310CTGAGTTA-CTGAGTTA-CTGAGTTADesign primers
1090342CTGAGTTA-CTGAGTTA-CTGAGTTA-CTGAGTTADesign primers
1090391TGAGTTAT-TGAGTTAT-TGAGTTATDesign primers
1090827AACTCTAT-AACTCTAT-AACTCTATDesign primers
1507758ATTTTGGGCGAC-ATTTTGGGCGAC-ATTTTGGGCGACDesign primers
1641296AGTTGTTGAGTTACTG-AGTTGTTGAGTTACTG-AGTTGTTGAGTTACTGDesign primers
1664751GAGTTAGAA-GAGTTAGAA-GAGTTAGAADesign primers
1664964AACTCAGC-AACTCAGC-AACTCAGCDesign primers
1666426AACTCAGTAACTCTTTTAACTCAGC-AACTCAGTAACTCTTTTAACTCAGC-AACTCAGTAACTCTTTTAACTCAGCDesign primers
1944496TGAGTTTATAGAGTTAC-TGAGTTTATAGAGTTAC-TGAGTTTATAGAGTTAC-TGAGTTTATAGAGTTAC-TGAGTTTATAGAGTTAC-TGAGTTTATAGAGTTACDesign primers
2082911CAACTCTATTAACTCAG-CAACTCTATTAACTCAG-CAACTCTATTAACTCAG-CAACTCTATTAACTCAG-CAACTCTATTAACTCAG-CAACTCTATTAACTCAGDesign primers
2176566AGGCTAG-AGGCTAG-AGGCTAG-AGGCTAGDesign primers
2427267TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2427372TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2427585TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2427789TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2473705TGAGTTGA-TGAGTTGA-TGAGTTGADesign primers
2474990TAACTCTTTTAACTCAGCAACTCAA-TAACTCTTTTAACTCAGCAACTCAA-TAACTCTTTTAACTCAGCAACTCAA-TAACTCTTTTAACTCAGCAACTCAA-TAACTCTTTTAACTCAGCAACTCAA-TAACTCTTTTAACTCAGCAACTCAADesign primers
2560578AAGTTGCTGAGTTACT-AAGTTGCTGAGTTACT-AAGTTGCTGAGTTACT-AAGTTGCTGAGTTACTDesign primers
2560643AGTTGCTGAGTTGCTGAGTTACTA-AGTTGCTGAGTTGCTGAGTTACTA-AGTTGCTGAGTTGCTGAGTTACTA-AGTTGCTGAGTTGCTGAGTTACTA-AGTTGCTGAGTTGCTGAGTTACTADesign primers
2560819AACTCTATAACTCAGC-AACTCTATAACTCAGC-AACTCTATAACTCAGC-AACTCTATAACTCAGC-AACTCTATAACTCAGC-AACTCTATAACTCAGCDesign primers
2606739GAGTTGCT-GAGTTGCT-GAGTTGCT-GAGTTGCT-GAGTTGCT-GAGTTGCTDesign primers
2606788AGTTACTG-AGTTACTG-AGTTACTGDesign primers
2635634AATTGAA-AATTGAA-AATTGAA-AATTGAADesign primers
3109847CGACCTAC-CGACCTAC-CGACCTACDesign primers
3110168GGTAGGTC-GGTAGGTC-GGTAGGTCDesign primers
3409997AACTCAGTAACTCATC-AACTCAGTAACTCATC-AACTCAGTAACTCATCDesign primers
3454871TGAGTTAC-TGAGTTAC-TGAGTTAC-TGAGTTACDesign primers
3532854AACTCAGC-AACTCAGC-AACTCAGCDesign primers
3532879ACTCAATAACTCAGCAACTCAGCA-ACTCAATAACTCAGCAACTCAGCA-ACTCAATAACTCAGCAACTCAGCA-ACTCAATAACTCAGCAACTCAGCA-ACTCAATAACTCAGCAACTCAGCADesign primers
3836865AAAGGTA-AAAGGTA-AAAGGTA-AAAGGTADesign primers
3858585GCAAAAAGCTAAAG-GCAAAAAGCTAAAG-GCAAAAAGCTAAAGDesign primers
3911707AATTTTC-AATTTTC-AATTTTC-AATTTTCDesign primers
4138751TAACTCAA-TAACTCAA-TAACTCAADesign primers
4196882TTTAGCT-TTTAGCT-TTTAGCT-TTTAGCT-TTTAGCTDesign primers

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