Microsatellites /Tandem Repeats database

Genome: Odoribacter splanchnicus DSM 20712

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
170102AAGAGTTGCTGAGTTATTGAGTTG-CTGAGTTGCTGAGTTATTGAGTTG-CTGAGTTGCTGAGTTATTGAGTTG-CTGAGTTGCTGAGTTATTGAGTTG-CTGAGTTGCTGAGTTATTGAGTTGDesign primers
233765AAAAAGCTAGAGGC-TAAAAGCTAGAGGC-TAAAAGCTAGAGGCDesign primers
336575TAACTCTG-TAACTCTG-TAACTCTGDesign primers
424864CCTCTATAACTCAGTA-ACTCTATAACTCAGTA-ACTCTATAACTCAGTADesign primers
659365CTGAGTTT-CTGAGTTT-CTGAGTTTDesign primers
972339AAATGCACAACCAAACGCACAACCAAATGCACAACCDesign primers
998696AAAAGGCTATAAGCTAAAAGCTATAGGCTATAAGCTAAAAGCTAAAGGCTATAAGCTAAAAGCDesign primers
1088267AGCAACTCAGTAACTCAGTAACTCAGCAACTTAGCAACTCAGTAACTCAGCAACTTAGCAACTCAGTAACTCDesign primers
1088340GCAACTTAGCAACTTAGCAACTCAGCAACTTAGCAACTCAGTAACTCAGCAACTTAGCAACTTAGCAACTCAGCAACTTAGCAACTCAGCAACTCADesign primers
1090288GAGTTGCTGAGTTACT-GAGTTGCTGAGTTACT-GAGTTACTGAGTTACT-GAGTTGCTGAGTTACT-GAGTTACTGAGTTACTDesign primers
1090391TGAGTTAT-TGAGTTAT-TGAGTTATDesign primers
1090827AACTCTAT-AACTCTAT-AACTCTATDesign primers
1507756AGATTTTGGGCGACATTTTGGGCGACATTTTGGGCGDesign primers
1628514GCTGTAGGCTAAAGGCTGTAGGCTAAAAGCTATAGGCTAAAGGCTGTAGGCTAAAAGCTATAGGCTAAAGDesign primers
1641295AAGTTGTTGAGTTACT-GAGTTGTTGAGTTACT-GAGTTGTTGAGTTACTDesign primers
1664601AGAGTTGCTGAGTTAAAAGAGTTACTGAGTTAAAAGAGTTACTGAGTTAAADesign primers
1664751GAGTTAGAA-GAGTTAGAA-GAGTTAGAADesign primers
1664926TTATAACTCAGCAACTCTTTTAACTCAGCAACTCTTTTAACTCAGCAACTCDesign primers
1666423TGTAACTCAGTAACTCTTTTAACTCAGCAACTCAGTAACTCTTTTAACTCAGCAACTCAGTAACTCTTTTAACTCDesign primers
1804433ATTGGCATTCCAATGGCATTCCAATGGCATTCCDesign primers
1944489GAGTTATTGAGTTTATA-GAGTTACTGAGTTTATA-GAGTTACTGAGTTTATA-GAGTTACTGAGTTTATA-GAGTTACTGAGTTTATA-GAGTTACTGAGTTTATADesign primers
1998184AGCCTATAGCTTTTAGCATTTAGCTTTTAGCTTTTAGCATTTAGCATTTAGCTTTTAGCATTTAGCTTTTAGCTTTTAGCATTTDesign primers
2082895AACTCTATTAACTCAAC-AACTCTATTAACTCAGC-AACTCTATTAACTCAGC-AACTCTATTAACTCAGC-AACTCTATTAACTCAGC-AACTCTATTAACTCAGC-AACTCTATTAACTCAGCDesign primers
2176566AGGCTAG-AGGCTAG-AGGCTAG-AGGCTAGDesign primers
2427267TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2427372TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2427474TCT-TCT-TCT-TCT-TCT-TAT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2427585TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2427789TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCT-TCTDesign primers
2473705TGAGTTGA-TGAGTTGA-TGAGTTGADesign primers
2474982TAACTCAGTAACTCTTTTAACTCAG-CAACTCAATAACTCTTTTAACTCAG-CAACTCAATAACTCTTTTAACTCAG-CAACTCAATAACTCTTTTAACTCAG-CAACTCAATAACTCTTTTAACTCAG-CAACTCAATAACTCTTTTAACTCAGDesign primers
2527526AATGTTCAGAAAATGTTCGGAAAATGTTCGGAADesign primers
2560577AAAGTTGCTGAGTTAC-TAAGTTGCTGAGTTAC-TAAGTTGCTGAGTTAC-TAAGTTGCTGAGTTACDesign primers
2560642AAGTTGCTGAGTTGCTGAGTTACT-AAGTTGCTGAGTTGCTGAGTTACT-AAGTTGCTGAGTTGCTGAGTTACT-AAGTTGCTGAGTTGCTGAGTTACT-AAGTTGCTGAGTTGCTGAGTTACT-AAGTTGCTGAGTTGCTGAGTTGCTDesign primers
2560795AACTCAGTAACTCTAT-AACTCAGTAACTCTAT-AACTCAGCAACTCTAT-AACTCAGCAACTCTAT-AACTCAGCAACTCTAT-AACTCAGCAACTCTAT-AACTCAGCAACTCTAT-AACTCAGCAACTCTATDesign primers
2606738AGAGTTGC-TGAGTTGC-TGAGTTGC-TGAGTTGC-TGAGTTGC-TGAGTTGCDesign primers
2606787GAGTTACT-GAGTTACT-GAGTTACTDesign primers
2635634AATTGAA-AATTGAA-AATTGAA-AATTGAADesign primers
3109847CGACCTAC-CGACCTAC-CGACCTACDesign primers
3110168GGTAGGTC-GGTAGGTC-GGTAGGTCDesign primers
3383031ATAGGCT-AAAGGCT-ATAAGCT-AAAGGCT-AAAGGCT-AAAGGCTDesign primers
3409996TAACTCAGTAACTCAT-CAACTCAGTAACTCAT-CAACTCAGTAACTCATDesign primers
3454871TGAGTTAC-TGAGTTAC-TGAGTTAC-TGAGTTACDesign primers
3532854AACTCAGC-AACTCAGC-AACTCAGCDesign primers
3532879ACTCAATAACTCAGCAACTCAGCA-ACTCAATAACTCAGCAACTCAGCA-ACTCAATAACTCAGCAACTCAGCA-ACTCAATAACTCAGCAACTCAGCA-ACTCAATAACTCAGCAACTCAGCADesign primers
3641784AAAAGCTAAAAGCAAAAAGCTAAAGGCTAAAAGCAAAAGGCTAAAAGCTAAAGGCTAAAAGCTAAAGGCTAAAAGCAAAAAGCTAAAGGCTAAAAGCAAAAGGCTDesign primers
3674482GCTAAAGGCTAGAGGCTAGAGGCTAAAAGCTAAAGGCTAGAGGCTAAAAGCTAAAGGCTAGAGDesign primers
3836865AAAGGTA-AAAGGTA-AAAGGTA-AAAGGTADesign primers
3858583AAGCAAAAAGCTAAAGGCAAAAAGCTAAAGGCAAAAAGCTAADesign primers
3911707AATTTTC-AATTTTC-AATTTTC-AATTTTCDesign primers
4138727TAACTCAGTAACTCAA-TAACTCAGTAACTCAA-TAACTCAATAACTCAADesign primers
4196880CCTTTAGCTTTTAGCTTTTAGCTTTTAGCTTTTAGCTTATAGCCTCTAGCTTTTAGCTTATAGDesign primers

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