Microsatellites /Tandem Repeats database

Genome: Odoribacter splanchnicus DSM 20712

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
68211ATATACTCTTATACTCATATACTTDesign primers
85792GCCTCCGCCGCCTCCGTCGCCTTCGCCDesign primers
170100AAAAGAGTTGCTGAGTTATTGAGT-TGCTGAGTTGCTGAGTTATTGAGT-TGCTGAGTTGCTGAGTTATTGAGT-TGCTGAGTTGCTGAGTTATTGAGT-TGCTGAGTTGCTGAGTTATTGAGTDesign primers
233763GTAAAAAGCTAGAGGCTAAAAGCTAGAGGCTAAAAGCTAGAGDesign primers
336548TCTAACTCTGTAACTCTGTAACTCDesign primers
336573TTTAACTC-TGTAACTC-TGTAACTC-TGTAACTCDesign primers
363393TTAT-TTAC-TTAC-TTAC-TTAC-TTACDesign primers
392315AACTTAGTAACTTAGTAACTCAATAACTCAGCAACTCAGTAACTCAATAACTCAGCAACTCAGCAACTCAATDesign primers
403720TTTATAAACTTTATGAACTTTACAAACDesign primers
424860TGTCCCTCTATAACTCAGTAACTCTATAACTCAGTAACTCTATAACTCDesign primers
449008CAACAGGGAAGAGCAGGGAAATACAGGGAADesign primers
452153CGGTTTTAACGGTTATAAAGGTTTTAADesign primers
550322GCTCCTCCGACTCCTCCGGCTGCTCCGDesign primers
555243TAAATCAAAAATCATAAATCGAAAATCADesign primers
605100GCTATAGGCTATAAGCTAGATGCTATAAGCTAAAGGCTATAGDesign primers
627761ATAAAATCAAAAAAAATCAGATAAGATGAADesign primers
643014AAGCAAATATAAGAAAAAATAGGCAAATAADesign primers
659360AGTTACTGAGTTTCTGAGTTTCTGDesign primers
972338AAAATGCACAACCAAACGCACAACCAAATGCACAACDesign primers
998689AAAAAGT-AAAAGGC-TATAAGC-TAAAAGC-TATAGGC-TATAAGC-TAAAAGC-TAAAGGC-TATAAGCDesign primers
998785TAGCCTTTAGCCTTTAGCTTATAGCCTTTAGCCTTTTACCTTDesign primers
1035880ATATATAAATATATATTTATATATDesign primers
1088179CTGAGTTA-TAGAGTTA-CTAAGTTA-TAGAGTTA-AAGAGTTA-AAGAGTTADesign primers
1088250CAACAACTCAGCAACTTAGCAACT-CAGTAACTCAGTAACTCAGCAACT-TAGCAACTCAGTAACTCAGCAACT-TAGCAACTCAGTAACTCAGCAACT-TAGCAACTTAGCAACTCAGCAACT-TAGCAACTCAGTAACTCAGCAACT-TAGCAACTTAGCAACTCAGCAACT-TAGCAACTCAGCAACTCAACAACTDesign primers
1090285ATAGAGTTGCTGAGTTACTGAGTTGCTGAGTTACTGAGTTACTGAGTTACTGAGTTGCTGAGTTACTGAGTTACTGAGTTACTGAGTTACTGAGTTDesign primers
1090382CTGAGTTA-CTGAGTTA-TTGAGTTA-TTGAGTTADesign primers
1090821CCCAACAACTCTATAACTCTATAACTCTATAACTCAGCAACTCTATAADesign primers
1103519TTATAACTCTTATAACTCTACAACTCTTGTAACTCTATAACTCTTATAAAADesign primers
1136954AACCTAACCCAACCAAAGCTAACCTDesign primers
1296828ATAACTCTATAACTCAGTAACTCAACAACTCAGTAACTCTATAACTCAGTAACTCAACAACTCAGCAACTCTACAACTCADesign primers
1350345AAGGGCGGAAGGACGTGCGGAAGGAAGGGCAGAAGGDesign primers
1393747TTGTTGATCTTTGTTCTGATCTTGACGGTCTTTATTCTGATCCTGTTGATCTTTATTCTGATCDesign primers
1393849ATCCTTGTTCTGATCTTTGTTTTGATCTTTATTCTGGTCCTTGTTCTGATCCTGATTCTGDesign primers
1507754CAAGATTTTGGGCGACATTTTGGGCGACATTTTGGGDesign primers
1540973TACA-TACA-TACA-CACA-TACA-CACADesign primers
1584390AGTTTTTG-AGTTGCTG-AGTTACTG-AGTTACTG-AGTTGCTG-AGTTACTGDesign primers
1590627CCTTTTACTTTTTACCTTTTACCTTTTADesign primers
1591859TTATTCGTTTATTTGTTTATTCTTDesign primers
1600672GCCTTTTAGCCTTTCAGCCTTTTADesign primers
1607440TCCCACTTTAAACCACTTTACCCCACTTTTDesign primers
1607722ATTTAATGTGAATTTAACCTGAATTTAATCTGGDesign primers
1612740CATTGCCATACCCATTGCCATCGCCATTGCCATACADesign primers
1625044GTGTTTCATCGTTTGTCATCCTGTTTCACCDesign primers
1628489AAAGGCTAAAAGCTATAGGCTAAAGGCTDesign primers
1628518TAGGCTAAAGGCTGTAGGCTAAAAGCTATAGGCTAAAGGCTGTAGGCTAAAAGCTATAGGCTAAAGGTTADesign primers
1629371ACTTTTT-ACCTTTT-ACCTTTT-ACTTTTT-ACTTTTTDesign primers
1641293AAAAGTTGTTGAGTTA-CTGAGTTGTTGAGTTA-CTGAGTTGTTGAGTTADesign primers
1641365CTGAGTTATTGAGTTACTGAGTTGDesign primers
1647942TAGCTTT-TAGCCTT-TAGCCTT-TAGCTTTDesign primers
1664599GTAGAGTTGCTGAGTTAAAAGAGTTACTGAGTTAAAAGAGTTACTGAGTTAAAAGAGTTGCTGAGTTGDesign primers
1664701CTGAGTTACTAAGTTTTTGAGTTTCTGAGTTTCTGAATTATTAAGTTADesign primers
1664750TGAGTTAGA-AGAGTTAGA-AGAGTTAGADesign primers
1664924CTTTATAACTCAGCAACTCTTTTAACTCAGCAACTCTTTTAACTCAGCAACDesign primers
1666420TCATGTAACTCAGTAACTCTTTTAA-CTCAGCAACTCAGTAACTCTTTTAA-CTCAGCAACTCAGTAACTCTTTTAA-CTCAGCAACTCAGTAACTCTTTTAADesign primers
1764890TTATTCTATTTTATATTATTTTACTTTGTTDesign primers
1783407GTGTCCCTCTAAATGTCCCCCTAAACGTCCCTCTAADesign primers
1804432TATTGGCATTCCAATGGCATTCCAATGGCATTCDesign primers
1857000CT-GT-AT-GT-GT-GT-GT-AT-GT-AT-GT-GT-AT-GT-ATDesign primers
1907918AATTTAA-AATTTAA-AATCTAA-AATTTAA-AATTAAADesign primers
1944487CTGAGTTATTGAGTTTA-TAGAGTTACTGAGTTTA-TAGAGTTACTGAGTTTA-TAGAGTTACTGAGTTTA-TAGAGTTACTGAGTTTA-TAGAGTTACTGAGTTTADesign primers
1944591GAGTTACTGAGTTGCTGAGTTAATDesign primers
1950120AGGTAAAAAGTAAAAGGTTAAAGTTAAADesign primers
1988819AAATTAATAAAAAGAAATAATAATTAAAAADesign primers
1998181CTCAGCC-TATAGCT-TTTAGCA-TTTAGCT-TTTAGCT-TTTAGCA-TTTAGCA-TTTAGCT-TTTAGCA-TTTAGCT-TTTAGCT-TTTAGCADesign primers
1998266TTAGCTT-TTAGCAT-TTAGCTT-TTAGCTT-TTAGCAT-TTAGCTT-TTAGCATDesign primers
2027681TTTTAGTA-TTTTAGTA-TATTAGTADesign primers
2082706GAGTTGCT-GAGTTACT-GAGTTACT-GAGTTGCTDesign primers
2082755TGAGTTGTTGAGTTGATAAGTTGTTGAGTTGATAAGTTGTDesign primers
2082891CTTTAACTCTATTAACT-CAACAACTCTATTAACT-CAGCAACTCTATTAACT-CAGCAACTCTATTAACT-CAGCAACTCTATTAACT-CAGCAACTCTATTAACT-CAGCAACTCTATTAACTDesign primers
2086316TT-TT-TT-TT-CT-TT-TT-AT-CT-TT-CT-TT-TDesign primers
2122326GTTGTAACTTTTGTAACTGTTGTAAGTDesign primers
2175443AAACAAAAAATAACAAAACAAAACCDesign primers
2176555CTAGAGGCTAAAGGCTAGAGGCTAGAGGCTAGAGGCTAGAAGDesign primers
2335754TTTTACC-TTTTACC-TTTCACC-TTTTACCDesign primers
2351722TAAAGGCTAAAAGCTAAAGGCTAAAGGCDesign primers
2358755AAATTTACAATTTAAAATTTAAAATTAADesign primers
2367857AGAAGCTGAAGCTGAAGCAGAAGTDesign primers
2391157AAAAGGCGAAAGGCTAGAAGCTAAAGGCTAGAAGCTAGAAGCGAAAAGCTAAAGGCTAGAGGCDesign primers
2413775TTTTACCTTTAACCTTTTACTTTTTACTDesign primers
2427077TTCTTA-TTCTTA-TTATTA-TTCTTTDesign primers
2427266ATC-TTC-TTC-TTC-TTC-TTC-TTC-TTC-TTC-TTCDesign primers
2427371ATC-TTC-TTC-TTC-TTC-TTC-TTC-TTCDesign primers
2427473ATC-TTC-TTC-TTC-TTC-TTA-TTC-TTC-TTC-TTC-TTC-TTCDesign primers
2427584ATC-TTC-TTC-TTC-TTC-TTC-TTC-TTCDesign primers
2427687TCT-TCT-TCT-TAT-TCT-TCT-TCT-TCTDesign primers
2427788ATC-TTC-TTC-TTC-TTC-TTC-TTC-TTCDesign primers
2473685TAAAAGAG-TTGATGAG-TTATTGAG-TTGATGAG-TTGATGAG-TTGATGAGDesign primers
2473734TATTGAGT-TACTGAGT-TACTGAGT-TATTGAGTDesign primers
2474977CTTTTTAACTCAGTAACTCTTTTAA-CTCAGCAACTCAATAACTCTTTTAA-CTCAGCAACTCAATAACTCTTTTAA-CTCAGCAACTCAATAACTCTTTTAA-CTCAGCAACTCAATAACTCTTTTAA-CTCAGCAACTCAATAACTCTTTTAA-CTCAGCAACTCAATAACTCTTTTAADesign primers
2477528AATTTCCCAAAGTTTCCGAAAATTTCAGAADesign primers
2527525GAATGTTCAGAAAATGTTCGGAAAATGTTCGGADesign primers
2543696AATTGACAATTGTCATTTGACAATTGATDesign primers
2560574AAAAAAGTTGCTGAGT-TACTAAGTTGCTGAGT-TACTAAGTTGCTGAGT-TACTAAGTTGCTGAGT-TACTAAGTTGCTGAGTDesign primers
2560655GCTGAGTTACTAAGTTGCTGAGTT-GCTGAGTTACTAAGTTGCTGAGTT-GCTGAGTTACTAAGTTGCTGAGTT-GCTGAGTTACTAAGTTGCTGAGTT-GCTGAGTTACTAAGTTGCTGAGTTDesign primers
2560792TTAAACTCAGTAACTCTATAACTCAGTAACTCTATAACTCAGCAACTCTATAACTCAGCAACTCTATAACTCAGCAACTCTATAACTCAGCAACTCTATAACTCAGCAACTCTATAACTCAGCAACTCDesign primers
2568192ACTTTTTACCTTTTACTTTTCACCTTTTDesign primers
2593934AGCCTTTAGCTTATAGCTTTTAGCTTATAGCTTTTAGCCTTTAGCTTATAGCTTTTAGCCTTTDesign primers
2606736AAAGAGTT-GCTGAGTT-GCTGAGTT-GCTGAGTT-GCTGAGTT-GCTGAGTTDesign primers
2606785CTGAGTTA-CTGAGTTA-CTGAGTTA-CTGAGTTADesign primers
2607011ATAACTCAACAACTCAGTAACTCADesign primers
2635633TAATTGA-AAATTGA-AAATTGA-AAATTGADesign primers
2659246AAAGTTTATAAAGTTCATAATGTTTATDesign primers
2687898TACATATTAACTACATGATAACTACCTATTTACDesign primers
2722369AAACCACCGAAGCCACCGAAACTACCGDesign primers
2750564TTTTTTCTTTCTTTTTTATTATTTTDesign primers
2770169ATAAGCTATAGGCTACAAGCTATAAGCTDesign primers
2773771AAGTTTATA-AAGTTTATA-AAGTTTAAADesign primers
2773827TTATGAACT-TTATGAACT-TTATAAACTDesign primers
2854015AAAAAGT-GAAAAGT-GAAAAGT-AAAAAGTDesign primers
2866321CACCAACATCAACACCAACACCCADesign primers
2914524GCGATCCAAAG-ATGATCCAAAG-ATGATCCAAAGDesign primers
2993103TCTCCGT-TCTCCGT-TTTCCGT-TCTCCGCDesign primers
3042825AAAAAGGAAAAAGATAAAAGGTAAAAGGDesign primers
3062752TTTTCTGTTCTCTTCTGTTCTTTACTTTTTDesign primers
3109845AGCGACCTACCGACCTACCGACCTDesign primers
3110167TGGTAGGT-CGGTAGGT-CGGTAGGTDesign primers
3140941TTTCAAT-TTTCAAT-TTTTAAT-TCTCAATDesign primers
3153247TTTTAGCTTTTACCTTTTAGCTTTTACCDesign primers
3223733TAGCTTTCAGCTTTTAGCTTTTAGTTTTDesign primers
3236985TAAAAGTAGAAGTAAAAATAAAACDesign primers
3243469AATTTTCAATTTACCATTTTCAATTATCDesign primers
3254522AAA-AAA-AGA-ACA-AAA-AGA-AAA-ACA-ADesign primers
3301931TACTTTTTACTTTATACCTTTTACTTCTDesign primers
3383028GCAATAG-GCTAAAG-GCTATAA-GCTAAAG-GCTAAAG-GCTAAAGDesign primers
3383071CTATAGGCTATAAGCTAAAGGCTAAAGGCTATAGGCTATAAGCTAAAGGCTATAAGDesign primers
3383254TTTCGCCTATAGCTTTTCGCCTATAGCCTTTGGCCTTTAGCTDesign primers
3387481TTTAGCTTTTAGCCTATAGCTTTTTGCTDesign primers
3392790TGATTTTATTTGATTTTTTAGGATTTGATTDesign primers
3399125ATAAACTTTATGAACTTTACAAACTTTDesign primers
3409956CAACTCATCAACTCAGTAACTCAATAACTCAGTAACTCAATAACTCAGTAACTCATCAACTCAGTAACTCATCAACTCAGTAACTCATCAACTCATDesign primers
3420677GATTTTATTTGAATTCATTTGATTTDesign primers
3433922TCAACTCCAATTCAATTCCAATTCTTCTCCAATDesign primers
3454837AAAGAGTTACTGAGTTGTTGAGTTACTGAGTTGTTGAGTTACTGAGTTACTGAGTTACTGAGTTACTGAGTTGCTGAGTTDesign primers
3454918CTGAGTTGTTGAGTTGTTGAGTTGCTGAGTTGCTGAGTTACTGGGTTGCTGAGTTGDesign primers
3525020CTTTGTAAACTTTGTGAATTTTGTAAADesign primers
3532850CGATAACTCAGCAACTCAGCAACTCAGCAACTCAATAACTCAGCAACTDesign primers
3532899AGCAACTCAATAACTCAGCAACTC-AGCAACTCAATAACTCAGCAACTC-AGCAACTCAATAACTCAGCAACTC-AGCAACTCAATAACTCAGCAACTC-AGCAACTCAATAACTCAATAACCADesign primers
3641782AAAAAAGCTAAAAGCAAAAAGCTAAAGGCTAAAAGCAAAAGGCTAAAAGCTAAAGGCTAAAAGCTAAAGGCTAAAAGCAAAAAGCTAAAGGCTAAAAGCAAAAGGDesign primers
3666428GGATGAGGATCAGGATGTGGATGCDesign primers
3674464ATAAGCTAGAGGCTAAAAGCTAAAGGCTAGAGGCTAGAGGCTAAAAGCTAAAGGCTDesign primers
3674521GAGGCTAAAAGCTAAAGGCTAGAGGCTAGAGGCTAAAAGCTAAAAGCTAGAAGCTAAAGGCTGDesign primers
3676204AAAGAGTTAATGAGTTATAGAGTTDesign primers
3836864TAAAGGT-AAAAGGT-AAAAGGT-AAAAGGTDesign primers
3858595AAAGGCAAAAAGCT-AAAGGCAAAAAGCT-AAAGGCTAAAAGCTDesign primers
3862996TTAGCCT-TTAGCCT-CTAGCCT-TTAGCTTDesign primers
3911637ATAAGCTATAGGCTAAAAGCTATAAGCTDesign primers
3911706TAATTTT-CAATTTT-CAATTTT-CAATTTTDesign primers
4033601TGCAGGTGCGGGAGCAGGTGCAGTDesign primers
4042029TTTTTCATCTTTTGTCATCCTTTTGCTTCTDesign primers
4138686ATCACCCAGTAACTCAACAACTCAGTAACTCAACAACTCAGTAACTCADesign primers
4138735TAACTCAA-TAACTCAG-TAACTCAA-TAACTCAA-TAACTCAADesign primers
4153294CTACAAAAATATACAAAATTCTACGAAAAADesign primers
4168837TTTTTTTTTCATATTTTTTCTTTTTTGTTGDesign primers
4196873CTTTTTCCCTTTAGCTTTTAGCTTTTAGCTTTTAGCTTTTAGCTTATAGCCTCTAGCTTTTAGDesign primers
4210098AA-AG-AG-AT-AG-AG-AA-AG-AA-AA-AG-AGDesign primers
4295025ATTCATATACATATTGATATTCAGDesign primers
4355263AATTGACAATTGTCATTTGACAATTGATDesign primers

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