Microsatellites /Tandem Repeats database

Genome: Bacillus coagulans 2-6

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
49554CAATCC-CAATCC-CAGTCC-CATTCC-CATTCCDesign primers
239424GGATTTGAAGAAGGATTTAAAGAAGGATTGAAAGAADesign primers
274303CCGCTTCCGTTTTCGCTTCCGTTTDesign primers
443478GGAAAAGAAGAAGGAAGGGAAGAAGGAAGAGAAGAADesign primers
482285AAGGGAAGGAAG-AAGGAAAAGAAG-AAGGAAAAGAAG-AAGGAAAGGAAGDesign primers
722867AATCCCCATGGTCTGAATCCCCACGGCCTAAAACCCCATGGCCGGDesign primers
921498CGGCTGCGGTTACGGCGGTGGTTACGGCGGTGGTTADesign primers
957404GAAAAATG-GAAAAATG-GAAAAAAGDesign primers
1121799GATCTTCATCATCATGATCGTCATCGTCGTGATCCTGATCATCATDesign primers
1461848AGAAAATATGGGAAAAAATGAGACAAAATGDesign primers
1681047GCAGGTTCCGGTTTTGAAGGTGCGGGTTTTGCCGGTTCCGGTTTTGAAGGTGCCGGTTCTDesign primers
1788020GCATAATCCCGCATAAACCGGCATCACCCCDesign primers
1811346CCC-CCG-CCG-CCG-CCA-CCG-CCG-CCGDesign primers
1862946TTTGTT-TTTGTT-TTTGCT-TTTTTTDesign primers
1967834TTTTAAGCTGGAAACATCACTCTTCAAACTGGAAACATCGCTCTTTAAACCGGACACATCACTDesign primers
2067232CAA-CAA-CAA-TAA-TAA-CAA-CAA-CAADesign primers
2178527TG-CC-TT-TT-TT-TG-TG-TT-TT-TT-TA-TC-TT-TT-TTDesign primers
2190056GGAACCGGCGGGTATGGCACCGGAGGATATGGCACCGGAGGATATDesign primers
2367408GATCTTCATCATCATGATCGTCATCGTCGTGATCCTGATCATCATDesign primers
2427622CGGCACCGGACAGCTCGCATCGGGAACCGGGCAGCTTGCATCCGGATCCGGGCAGCTTGCATCDesign primers
2494480ATTATATAATATTTTAATATAATATDesign primers
2652162GTGTTGTTAGCAGTACTGCTGTTGGCAGTAGTGTTATTGGCAGTGDesign primers
2652231GTACTGTTTGCAGTACTGTTTCCCGTACTATTGGCADesign primers
2764790GCCGGGCTGAAACAGGATGTTGCAGGGCTAAAAGAAGATGTTGCAGGGCTGAAACAGGATGTCDesign primers
2792628GATCTTCATCATCATGATCGTCATCGTCGTGATCCTGATCATCATDesign primers
2998927GATCTTCATCATCATGATCGTCATCGTCGTGATCCTGATCATCATDesign primers

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