Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Clostridium acetobutylicum DSM 1731

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
15146	ATAATAATAGTATTAATAATAATT	Design primers
55096	TATAAATTTAAAAAAATTTAAATAATTTTA	Design primers
73184	TATAAATGCTACAAATGCAATAAATGC	Design primers
244538	ACAAGT-ACAAAT-ACAAAT-ACAACT	Design primers
261609	AAAGAAAAAGATGAAGAAATAGAA	Design primers
303114	ATAATGTAAAAATAATGTTAATAAAATGTGAAA	Design primers
367977	AAAAAAATAAAAACAAAAAGAAAAC	Design primers
371510	AATAATAGC-AATAATAGC-AATAATATC	Design primers
405807	ATGCAGTAAAAAGCAATAAAATGCAGTAAA	Design primers
419617	GTATATATAGTATATATGGTTTATATA	Design primers
456896	AGCAGT-AGCAGT-AGCGGT-AGCAGG	Design primers
508628	GAAAATCTTAGAAATTCTAAAAAAATCTTA	Design primers
521523	TA-AA-TA-TA-AA-TT-TA-AA-AA-TA-AA-AA	Design primers
598295	GAAAGAAAAGGAAATGAAAAGAAAA	Design primers
725960	TTTTT-ATATT-ATTTA-ATATT-TTATT-TTATT	Design primers
756847	TTATATATTATGTATTATATCATATATA	Design primers
783679	AATTAAAATTAGAACTAAAATTAC	Design primers
788267	AGC-AGC-AGC-AGC-CGC-AGC-AGC-AGC	Design primers
810814	TAAAATTGTATATATTTGTATTAAATTATA	Design primers
817040	AAATAATACACCAACTACAGGTGG-AAACACAACACCAACTACAGGCGG-AAACACAACACCAACTACAGGTGG-AAACACAACACCAACTACAGGTGG-AAACACAACACCAACTACAGGTGG-AAACACAACGCCAACTACAGGTGG-AAATACAACGCCAACTACAGGTGG-AAATACAACACCAACTACAGGTGG-AAATACAACGCCAACTACAGGTGG	Design primers
817707	GGAACAAATACAACACCAACTACAGGCGGAAATACAACACCAACTACGGGTGGAAATACAACACCGACTACA	Design primers
823522	ATAAATAATAATAATTATTAGTAAATAATA	Design primers
824565	ATAATTGGTAATTGAGAATTGATAATAG	Design primers
1084849	TAAAAAATAATAAATAAGAATAAAAAAGCA	Design primers
1184860	TTCTTCTTCTACTTCTTCTTCTAC	Design primers
1189233	AAATCAAACCAAATACAATCAAACC	Design primers
1212191	TATTGGAGCAATGATTGGAACAATGATTGGAACAAT	Design primers
1214345	AAGTATAAAA-ATGTATAAAA-ATATATAAAA	Design primers
1280344	GTTATACTATTTGCT-TGAATACTATTTGCT-TGAATACTATTTGCT	Design primers
1374040	TAATTTTTAGTGATTTTAAGTGAATTTTAG	Design primers
1421797	AAAATAAAAGTAAAAGTAAAAATT	Design primers
1423214	TTGGATTTGGTTTTAGATGTGGAT	Design primers
1454668	AAAATAAACTAAGATAAATTAGAATAAAGTAAAAT	Design primers
1460330	TTATATAATTATATTATTTTATAA	Design primers
1477161	TAATTCGTGTAAATCGTGTAATTCATG	Design primers
1499705	CTTCATCTA-AATCATCTA-AATCATCTA-AATCATCTA-AATCATCTA-AGTCATCTA	Design primers
1648842	ATAAAAATCAAATTAAAAATGAAA	Design primers
1651015	TAATAATATTAATAAAAATAATAC	Design primers
1665735	AGTTTTATTAAGTTGTCTTAAGTTTTCTTC	Design primers
1715715	TTATTTATTATAATTTATTGTTTTATATTA	Design primers
1729252	TGAAATATAATAAAAAATAATAAAAAATAA	Design primers
1748354	GAAATGTTATAAAATCTTATTAAATGATAT	Design primers
1754808	AAAATAATTAAAAAATCAATAAATAGTAATTAA	Design primers
1813491	TATTATTACTATCATTATTATTAA	Design primers
1861803	AGAAGATGAAGAAGAAGAAGAATA	Design primers
1925497	TAATATAGTATAATTTAAGATAATA	Design primers
1994379	AAAACCTTTATAAAGCTTTATAAACCCTTA	Design primers
2010271	ATTGATATATTGATTTATTGATAC	Design primers
2035208	CTCCTGCTGCTGCTCCTGCTTCTGCTCCTA	Design primers
2098569	TTTAATGTTAATTTTTATTTTAAT	Design primers
2161302	TT-TT-TT-TT-CT-TT-CT-TT-AT-TT-AT-TT-T	Design primers
2214896	TCATTTATATTATTTATATCATTTAAA	Design primers
2216871	TTGTTATTCTTTTTCTTCTTCTTTTTTTTCTTCTTT	Design primers
2226422	TTTGCACCACTTTACACCACTTTAAACCAC	Design primers
2277580	AAGAAAAAAAAGAATAAATAGAAAAAA	Design primers
2299435	TATATTTCTTTATTTTTTTTTATATTTTTT	Design primers
2309872	TTCATTATCAA-TTCATTATCAA-TTCTTTATTAA	Design primers
2357539	AAGTACAAGTTCAAATACAAGTAG	Design primers
2394029	TTTATTATATTTTTTTCTATATTAT	Design primers
2408608	ACCTACTCCTACACCAACACCTTC	Design primers
2408684	ACGAATACAAATACTAATACTAAT	Design primers
2477919	CTAGTTCTTGTTATAGTTCTTGTT	Design primers
2534570	GTGACATTTTGCGATATTTTGTTTCATTTT	Design primers
2558785	ATAGCAATAAATAAAAATAAATAGAAATAT	Design primers
2642921	TCTGTTGGTGTTGTTCCTGTTGTTGTTGTTCCTGATGGTGTTATT	Design primers
2642968	TGTTGTTGTTCCTGTTGGTGTTATTACTGTCGTTGTTGTTCCTGCTGTCGTTGTTCCTGC	Design primers
2736958	TTCTTTTTCTTCTTATTTTTCTTA	Design primers
2749249	TAATATATTATACTATAAAATAACA	Design primers
2842756	TA-AT-AA-AT-AA-AT-CA-AA-AA-TA-AA-TT-AT-AA-AT-AG-A	Design primers
2854254	ACGACTATGATCATGATCACGACCATGATTATGACCACGACCATGATTATGACC	Design primers
2854435	TGGACAAATGGGTCCTGGCTACGGTCAAATGGGTCCCGGTTACGGTCAAATGGGCCCTGGTTA	Design primers
2913318	AATAATCACAATAATAACCATAATCAC	Design primers
2913684	AGGAGA-AGGAGA-AGAAGA-AGGAGA-AGAAGA	Design primers
2955766	TTTAA-TTTAA-TTAAA-TTTAT-TTTAG	Design primers
2988522	ATTTCAACTTCACTTTCAATTTCA	Design primers
3030565	TTTCTTTTATTATCTCTTCTTTACT	Design primers
3119729	CATCTA-TATCTA-CATCTA-CATCTA	Design primers
3123920	TCTTCTTCTGCTTTTACTTCTGCTTTTACTTCTGCT	Design primers
3177513	AACGCTAACAAAGCTAACAAAGCTAAC	Design primers
3183235	GCTTTTGAAATCCTTTGAAAACTTTTGAAA	Design primers
3193858	TGTTTATTTTTATATTTATTTTTA	Design primers
3284838	CAGCTGCTGCACCTGCTGCACCTGCTG	Design primers
3353077	TCTTCATCTTTATCTGCAGCTTCA	Design primers
3365932	CTTTTTTATTTTTTCTTTTCTCTTTCTTCTTTTTA	Design primers
3401501	TTTAATATTTTCATATTTTAAAAT	Design primers
3466871	ATATTTTACTATTTTATTATTTTA	Design primers
3475130	GTAACCTTCTTTTTCAAAGCCTTCTTTTTCAAAGCCTTCTTTTTC	Design primers
3505008	AACAATAACAATAATAACAACAACAACAATAATAAC	Design primers
3505046	TAA-CAA-CAA-TAA-CAA-CAG-AAA-CAA-CAA-CAA-CAA-CAA	Design primers
3629407	TTAGTATTAGCATTAGTCTTAGTA	Design primers
3697673	CTTTGTATTATATTGTATTACTTTGTATTT	Design primers
3699007	ATATACTATAATACAATATAATACA	Design primers
3710800	ATAATTATAACTGTAATTATTATT	Design primers
3790664	AA-AA-AA-TA-AA-AA-GA-TA-TA-AA-AA-TA	Design primers
3940707	TAACTTTAATTTCAACTTTATCTT	Design primers
3940846	TTTTTCTTGTTCTTTTTATTCTTC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

15146

ATAATAATAGTATTAATAATAATT