Microsatellites /Tandem Repeats database

Genome: Nitrosomonas sp. Is79A3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
152740TAAAGC-TAAAGC-TAAAGC-TAAAGCDesign primers
347421TAATTAAG-TAATTAAG-TAATTAAG-TAATTAAGDesign primers
556168CACCAG-CACCAG-CACCAG-CACCAGDesign primers
820577CCTGCCACC-CCTGCCACC-CCTGCCACCDesign primers
1161872AAAAAC-AAAAAC-AAAAAC-AAAAACDesign primers
1267891GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GAT-GATDesign primers
1819747CGAGAA-CGAGAA-CGAGAA-CGAGAADesign primers
2076512CCACCCATG-CCACCCATG-CCACCCATGDesign primers
2462344GGTTCT-GGTTCT-GGTTCT-GGTTCT-GGTTCT-GGTTCT-GGTTCTDesign primers
2572187CTTCCATAC-CTTCCATAC-CTTCCATACDesign primers
2572284AGGTATGGA-AGGTATGGA-AGGTATGGADesign primers
2637914TGGGGG-TGGGGG-TGGGGG-TGGGGG-TGGGGG-TGGGGGDesign primers
3168677TTCTTTTTATCT-TTCTTTTTATCT-TTCTTTTTATCTDesign primers
3177385CTATTG-CTATTG-CTATTG-CTATTG-CTATTGDesign primers
3559253TTGATCAG-TTGATCAG-TTGATCAGDesign primers

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