Microsatellites /Tandem Repeats database

Genome: Nitrosomonas sp. Is79A3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
152740TAAAGC-TAAAGC-TAAAGC-TAAAGCDesign primers
347421TAATTAAG-TAATTAAG-TAATTAAG-TAATTAAGDesign primers
349358AT-CT-AT-CT-AT-CT-AT-CT-AT-AT-AT-CT-AT-AT-AT-CT-AT-CTDesign primers
556155GCACCA-GCACCA-ACACCA-GCACCA-GCACCA-GCACCADesign primers
614445AATAGTTTCAAATAGTTTTAAATGGTTTCADesign primers
820577CCTGCCACC-CCTGCCACC-CCTGCCACCDesign primers
1161872AAAAAC-AAAAAC-AAAAAC-AAAAACDesign primers
1267890AGA-TGA-TGA-TGA-TGA-TGA-TGA-TGA-TGA-TGA-TGA-TGADesign primers
1335876CCTACTTCGC-CCTACTTCGC-CCTAATTCGCDesign primers
1819747CGAGAA-CGAGAA-CGAGAA-CGAGAADesign primers
2076512CCACCCATG-CCACCCATG-CCACCCATGDesign primers
2462343AGGTTC-TGGTTC-TGGTTC-TGGTTC-TGGTTC-TGGTTCDesign primers
2572187CTTCCATAC-CTTCCATAC-CTTCCATACDesign primers
2572284AGGTATGGA-AGGTATGGA-AGGTATGGADesign primers
2637913CTGGGG-GTGGGG-GTGGGG-GTGGGG-GTGGGG-GTGGGGDesign primers
3168676CTTCTTTTTATC-TTTCTTTTTATC-TTTCTTTTTATCDesign primers
3177381ATTTCT-ATTGCT-ATTGCT-ATTGCT-ATTGCT-ATTGCTDesign primers
3367570CCTACTTCGC-CCTACTTCGC-CCTAATTCGCDesign primers
3559253TTGATCAG-TTGATCAG-TTGATCAGDesign primers

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