Microsatellites /Tandem Repeats database

Genome: Nitrosomonas sp. Is79A3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
152739ATAAAG-CTAAAG-CTAAAG-CTAAAGDesign primers
277235AAAGTCGAGAAAGAAAAAGCAGATAAAGAAAAAGCAGATAAAGAADesign primers
294752TCTCCA-TCTTCA-TCTTCA-TCTTCADesign primers
347411AGGAATAA-AATAATTA-AGTAATTA-AGTAATTA-AGTAATTA-AGTAATTADesign primers
349357CATCTATCTATCTATCTATATATCTATATATCTATCDesign primers
353866AGAGAAAAAGAGAATAAAAGAAAADesign primers
521325AACTAAACAGCTAAACAACTAAACDesign primers
525077ATCAAAAGAAAAGAAAAAGAAAAGAAAAAGAAADesign primers
556153CCGCAC-CAGCAC-CAACAC-CAGCAC-CAGCAC-CAGCACDesign primers
614441TTTCAATAGTTTCAAATAGTTTTAAATGGTDesign primers
820574ACACCTGCCACCCCTGCCACCCCTGCCDesign primers
961556AGATCCAGATCGGGATCCAGATCADesign primers
1048398GTATCGGTTTCGGTAGCGTTATCGDesign primers
1073397GTTTAGTTGTTTAGCTGTTTAGTTDesign primers
1161871AAAAAACAAAAACAAAAACAAAAACAGAAAAGAAADesign primers
1267889CAG-ATG-ATG-ATG-ATG-ATG-ATG-ATG-ATG-ATG-ATG-ATGDesign primers
1335875TCCTACTTCG-CCCTACTTCG-CCCTAATTCGDesign primers
1350870CCGGTTTTTATGGCTCTGGCTTCTATGGCTCGGGTTTCTATGGATDesign primers
1383714TATTAGTAGCTTTGTGTTGGTAGCTTTGTGTTAGTACCTTTGDesign primers
1520714CTACCCCTTGCATGGATGCGCGAGACCCCTTGCATGGATGCGCACTACCCCTAGCACCCATGCGCGDesign primers
1819745ACCGAG-AACGAG-AACGAG-AACGAGDesign primers
1940372CAAATTTCACATAAATTTTACATACATTTCACADesign primers
1945702CTCTACTATACCCTAATCTACTCTAATCTACTCTADesign primers
2076507CCATACCAC-CCATGCCAC-CCATGCCAC-CCATGCCACDesign primers
2164270ATTGGCGAGTTTTGGCGAGCACTTGCGAGTDesign primers
2324017TGAATTGAACGGAATTAAATTAAATDesign primers
2462342AAGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTT-CTGGTTDesign primers
2572186TCTTCCATA-CCTTCCATA-CCTTCCATADesign primers
2572281GGTAGGTATGGAAGGTATGGAAGGTATDesign primers
2594207CTGCAC-CTGCAC-CTTCAC-CTGCACDesign primers
2637912CCTGGG-GGTGGG-GGTGGG-GGTGGG-GGTGGG-GGTGGGDesign primers
2637972GGA-GGT-GGT-GGT-GGT-GGT-GGT-GGTDesign primers
2726284CTAATT-CTAACT-CTAACT-CTAACTDesign primers
2763345TCATGGTCACGGTCATCGTCACGGDesign primers
2775600GAGTAGGGCAAGTAGGGCGAGTAGGGCDesign primers
2782305CCGCCCTACTCGCCCTACCTGCCCTACDesign primers
2787802ATTTGGATTTTGATTTAGATCTGGDesign primers
2811075GCA-GCA-CCA-GCA-GCA-GCG-GCA-CCA-GCA-GCA-GCG-GCADesign primers
2827094AATCAGCATCAGAATCAGAATCACDesign primers
3168675ACTTCTTTTTAT-CTTTCTTTTTAT-CTTTCTTTTTATDesign primers
3177380AATTTC-TATTGC-TATTGC-TATTGC-TATTGC-TATTGCDesign primers
3367569TCCTACTTCG-CCCTACTTCG-CCCTAATTCGDesign primers
3480629GCCCGAATCGCCCGACTCGCCTGAATCDesign primers
3559250CAATTGAT-CAGTTGAT-CAGTTGAT-CAGTTGATDesign primers

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