Microsatellites /Tandem Repeats database

Genome: Streptococcus pseudopneumoniae IS7493

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
37244TTTTAATCA-CCTGAATCA-CCTGAATCA-CCTGAATCA-CCTGAATCA-CCTGAATCADesign primers
75802AAG-AAG-CAG-CAG-AAG-CAG-CAG-AAG-CAGDesign primers
114513AAAAAGAAAAGGAAAAATAAAATGDesign primers
195530AAAACTAAGAAAAACTAATAAAACCGAAGADesign primers
199480AGTGTATAA-AGTGTATAA-AGCGTATAADesign primers
202619GACTTTTTGAGAATTTTTAAGACCTTTTAADesign primers
223400TCATTATCATTTTGATTATCTTTADesign primers
249429TCATTATCATTTTGATTATCTTTADesign primers
441043GAAAAATTTTAAAAAATTCTGAAATATTCTDesign primers
553436ATTTTCAACTAAATTTTTAAATAAATTTTCAACTAADesign primers
716377AAAGAGGAAGAGCAAGAGGAAGAGDesign primers
849410TATTCCTTTGCATTCTTTTGCATTCCTTGGDesign primers
855981CAGCGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTG-AGCTGTGDesign primers
898736CTTTGACCAAAGTGTGACCAAAATTTGACCAAADesign primers
907099TGAGC-ACAGC-ACAGC-ACAGC-ACAGC-ACAGC-ACAGC-ACAGCDesign primers
944862ATATTG-ATATTG-ATGTTG-AGATTGDesign primers
1012891AAAAAATCAAAAAAAATGAAAAAATCTCAADesign primers
1018480AAGAATAAGGATAAGAATAAGAAADesign primers
1145983TTCTTTTTAGATTCTCTTTAGCTTCTTTTTGAADesign primers
1167705ATTGTTTTC-ATTGTTTTC-ATTATTTTCDesign primers
1200763AAAA-AACT-TACT-TACT-TACT-TACT-TACT-TACT-TACT-TACT-TACT-TACT-TACT-TACT-TACTDesign primers
1223967GCTAGTTT-CCTAGTTT-CCTAGTTTDesign primers
1271865CAGCAGCACCAGCTGCAGCAACAGDesign primers
1316103TT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-ATDesign primers
1342684AA-TA-TT-AA-TA-AA-AT-AT-CA-GT-AA-AA-TA-TA-AA-AA-ADesign primers
1591240AACAATCGATCACCATCGATAGCAATCGAADesign primers
1871112AAATTTCAACTAATTTCAATCAATTTCATCDesign primers
1939554TAATATCAC-AGCTATCAC-AGCTATCAC-AGCTATCAC-AGCTATCAC-AGCTATCACDesign primers
2056687ACGTTACTAC-ACTTTACTGC-ACTCTACTGC-ACTCTACTGC-ACTCTACTGC-ACTCTACTGCDesign primers
2067714GT-TT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-ATDesign primers

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