Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Sphingobium sp. SYK-6

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
21463	CTGCTCCTGCGCCTGCACCTGCTC	Design primers
26529	GCCACCGCCGCCGGCACCGCCAGC	Design primers
42490	GGCCAG-TGCCAG-TGCCAG-CGCCAG	Design primers
100472	ACGGCGGCGACGGCGGCAAGGGCGGCG	Design primers
199068	GCCGTCGGTGCGCTGGCCCTTGGGGCGCTGGCGCTCGGCGCGCTG	Design primers
212516	GCCAGCACCAGCACCAGCGCCAGG	Design primers
228150	GCCCACGCGCACGCCCTCGACCAC	Design primers
348860	GGCATCATCTTCCGCTCCCTCATCTTCCGCGTCCTCATCTTCCGC	Design primers
356800	CGCTTCTAT-CGCTTCTAT-CGCATCTAT	Design primers
417739	AGGTGGCAAGCCGGG-TGGTGGCAAGCCGGG-TGGCGGCAAGCCCGG	Design primers
463150	GGCGGCTTCAGGGGCGGCCTCGGGGGCGGCGGCAGG	Design primers
532119	GCGTGATCGGCGTGGTCGGCGTGATCG	Design primers
600661	CGTCCGCGACCGCGTCCGCTTCCG	Design primers
615314	GCTGGCGGTGGCGCTGGCGCTGGT	Design primers
656483	GGCCGCCGCCGCGCCCGCGACCGC	Design primers
702806	GCAGGCATCACAGGTCCAGGCATCACAGGCTCCGGCATCACAGAT	Design primers
771704	TGCGCGGGTGTGCGAGGATGTGCGCGGCTG	Design primers
773007	CTTATCCGCCGCTTATCCACAGCTTATCCACCA	Design primers
932556	GTGGGCGGGGGCGTGGGTGTGGGC	Design primers
932626	GCGTTGGCGTCGGCGTCGGTGTTG	Design primers
932665	TCGGCG-TCGGAG-ACGGCG-TCGGCG-TCGGGG-ACGGCG	Design primers
932749	TGGGCGTCGGCG-TGGGCGTCGGCG-GGGGCGCGGGCG	Design primers
966745	GCGCCGCGCTGTGCCGGGCCGAGCC	Design primers
975015	GAGCAGGCCCAGCAGGCCGAGAAGGCC	Design primers
1101809	GCGGGGGCGGCGGCGGGGGTGGGGGCAGGGGCGGCG	Design primers
1389778	CGCGTCATGACCGGGTCATGACCGCGTGAAGAC	Design primers
1476407	CGCCGCCGCCGCCCCCGCCGCCGC	Design primers
1571824	GCC-GCC-GCC-ACC-GCC-GCC-TCC-GCC	Design primers
1571857	GCC-GCC-GCC-GCC-TCC-GCC-GCC-ACC	Design primers
1573083	TCGCCGCGCCGGCCGCCGCTCCGGTCGCCAAGCCGG	Design primers
1764184	GGCGGCGGCGGCGGTGGCGCCGGC	Design primers
1791435	GCTGATCCTCGCGCTGCTGCTCGCGCTGTTCGTCGC	Design primers
1800095	TCGCCATGGCCATTGCCATCGCCG	Design primers
1888661	GGGGTGGGCGTGGGGGTCGGTGTGGGCGTGGGGGTCGGTGTGGGGGTC	Design primers
1967418	CAGCACCAGCAACAGCGCCACCAC	Design primers
1978244	TCGAGAACGCCGCGAACGCCGTCGACAATGCTGCCAACGCCGTCGACAATGCCGCGAACGTTG	Design primers
2146160	TGCCGGTGCCGTGGCCGGAGCCGG	Design primers
2274073	CCG-CCG-CCG-CCG-CCC-CCG-CCG-CCG-CCG-GCG	Design primers
2346413	CGGCTACGGCAAGGGCTACAGCTA	Design primers
2527886	CGGGCCGAGCCGGTCCGTGCCGGCC	Design primers
2595580	CGCGGGCCAGCGCGCGGCCCTGCGCGCGGCCCATCG	Design primers
2626915	GCCCCGCTCGCTCCGCTCGCCCCGCTC	Design primers
2700556	GGTCGCGGGCGCGTTCGCGATCGC	Design primers
2741549	CCA-CCA-GCA-CCA-GCA-CCA-GCA-CCA	Design primers
2763091	TCCGTCATCGCAGCACCCGTCATCCCACCACCCTTCATCGCAGCA	Design primers
2772812	CCGCCCGCG-CCGCCCGCG-CCGCCTGCG	Design primers
2959536	CCGCGCCCCGCAGCGCCGCATCGCG	Design primers
3004464	GGCCGGGTCGGGTCGGGCTGGGCCT	Design primers
3038870	CCCCG-CCCCA-GCCCG-GCCCG-CGCCG	Design primers
3100136	CCGATG-CCTGTG-CCTGTG-CCTGTG-CCTGTG-CCTGTG	Design primers
3259792	ATCATC-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG	Design primers
3354672	CAGAGCGCGGAGAGCGCGCACAGCGCG	Design primers
3416100	ACCATCGAGAAGGACATGACGGGCGAGAAGGACATGACGGGCGAGAAGGACATG	Design primers
3435983	CCGGCCCTGCCCCGCCCGCCCCGGT	Design primers
3537844	GTCGGC-GTCGGC-GTGGGG-GTCGGC-GTCGGG-GTCGGC	Design primers
3545179	GCGGCGGCTTCGGCGGGGGCTTTGGCGGCGGTTTCTTCGGCGGCTTCT	Design primers
3545600	GGGATCGTCCGGGTCCTCGGGCTCGTCCGGATCATCGGGCTCGTCCGGATCGTC	Design primers
3545718	TCCAGCGGCTCGTCTGGGTCGAGCGGATCGTCCGGGTCCAGCGGCTCGTCGGGA	Design primers
3576411	CGG-CGG-AGG-CGG-AGG-CGG-CGG-AGG-CGG-CGG	Design primers
3576442	GGA-GGC-GGC-GGC-GGG-GGC-GGC-GGC	Design primers
3587597	CCGCCCCGCCGGCCCGCCGTCCCG	Design primers
3619314	TCGTCC-TCATCC-TCATCC-TCGTCC	Design primers
3627663	CGCCCCGGGGGCACGGGCACCGGGGGGACGGGCACCGGGGGAACGGGCGCCGGGGGCACG	Design primers
3633449	GCTTCGGCTTCCGCTGCGGCTTCC	Design primers
3681056	GAGCATGATCATGACCATGATCAT	Design primers
3692720	TGA-CGA-TGA-TGA-CGA-CGA-GGA-CGA-GGA-CGA	Design primers
3811902	GCTGTCG-CCTGTCG-CCTGTCG-CCTGTCG-CCTGTCG	Design primers
3877812	GACCGCCCCGGCCGCCCCGAACGCCCC	Design primers
3879987	CCGGCTGCGGCTGCGGCTCCAGCT	Design primers
3967662	GCCGACGCCTGCCCCGACGCCTGCGCCAACCCCTGC	Design primers
4012256	CGGAGCACTGGTCGTGGGAGCACTGGTGGTGGGCGCACTGGTGGT	Design primers
4077405	ACCGCC-ACCGCC-GCCGCC-GCCGCC	Design primers
4077436	CCGCCGCCGCCGCCACCGCCGCCA	Design primers
4164923	CGC-CGA-GGC-CGA-CGC-CGC-CGC-CGC	Design primers
4173225	CCTGCTCCTCCTCCTGTTCCTGGT	Design primers
4180390	CGCGGCCGCGACCTCGGCCCCGGC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

21463

CTGCTCCTGCGCCTGCACCTGCTC