Microsatellites /Tandem Repeats database

Genome: Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
6197AAAATTTAAAAAAATTAATAAAAATTGTAADesign primers
12393TT-TT-AT-TT-TT-GT-TT-GT-AT-TT-TT-TTDesign primers
20008TTCTATAAATATTATAAAAATATTATTTAAATADesign primers
23425TT-TA-TT-TT-TT-CA-TT-TT-TT-TA-TT-TTDesign primers
38311AT-AA-AA-AA-AT-CA-AA-AA-AT-AA-AA-AADesign primers
39100TTAATAATAATATTAAAATTATTADesign primers
44927TAATATATTAATAAATTAAAATATDesign primers
60174TT-TT-TT-TT-GT-TT-TT-CT-AT-TT-TT-TT-TDesign primers
68255TTAATTTATTTTCATTTAGTTGAATDesign primers
78764TTATTTTTTTTTTTAATTTTATTTDesign primers
91084TTTATTTTTATATTGATTTTTTTTDesign primers
123791TTTTAAAATATTTAAACATATTTTTAAAAADesign primers
127894AATAAAAAAAAAGAAAATTAAATAADesign primers
143751TAAAAAAATAACAAAATATAAAAADesign primers
144682TT-CT-TT-TA-TT-TT-TT-TT-TC-TG-TT-TT-TDesign primers
168974TTTTTTAAATTTTTTGAAAATTATTAAAATDesign primers
174943AAATTTAAAATCTAAAATTAAATATTTADesign primers
178734AAAAAATAAAAAAGTAAAAAAAAADesign primers
195458ATTTTTATTTTCCTTTTTAGTTTTDesign primers
196133TTTTATTATTATTTTTATTTTTTTDesign primers
196311TT-TT-TT-TA-AA-TT-TT-TT-TG-AA-AT-TT-TT-TT-TC-TA-TDesign primers
197799AGAAAAATATAAAAAATTATATTAAAATATDesign primers
197858ATATT-ATTTT-ATTTT-TTATT-ATTTTDesign primers
199370TTTTTTATTATTTCTTCTTATTTTTATTTADesign primers
213342TTTTTTTTTCTTTTTTCTTTTTTTADesign primers
221951AT-TT-TT-AT-TT-CT-AT-TT-TT-AT-AT-TTDesign primers
229967GA-GA-AA-AA-TA-AA-GA-AA-AA-AA-GA-AA-AA-TA-TADesign primers
232543AAAGAAAAAAAAATAATAAAAAATAAAAAGDesign primers
236739AAAAAAAACAAAATATAAAAAAAATCAAAADesign primers
238225AAAAAAAGAAGAAAAAAAGAAAATADesign primers
250338TA-TA-TT-TT-CT-AT-TT-TA-TC-TT-TT-AT-TT-TTDesign primers
250406TTTTTCTTTTTTTATTTTATTTTATDesign primers
250963TATTAATA-AATTAATA-AATTAATA-AATTAATADesign primers
256092TTCAAAAAAATTTAAAAGAATTTAAAAAAADesign primers
258589TTTTTAATTAATTTTTTATTTATTTTTAATCGADesign primers
260993AAAAAAAAGAAAAACCAAAAATAAAAAATADesign primers
261742TTCAAATTTTTTGCAATTTTTTTAGATTTTDesign primers
286111TT-TC-CT-TT-TT-TT-AC-TT-TT-TT-TC-TT-TT-TDesign primers
308202TATCTTTTTTTTTCTTCTTTTAGTTTTTTTDesign primers
317167AACAAAAGATTTTCCTTCAATTATAGATTTTCCTTCAATTATAGATTTTCCTTCDesign primers
357193AA-AA-AA-AA-GA-TA-AA-AA-AT-AA-AA-GA-AA-AA-TADesign primers
362337TTTTATTTTTTTCTATTTCATTTTTDesign primers
370411AAAAAATAGGAAAAATTAAGTAAAAAAAGGDesign primers
374430AT-AT-AT-TT-AA-AT-AT-TT-AT-TT-AT-TTDesign primers
387053ATAAAATTCTATAAATTTTTTTAAAATTATDesign primers
425295TT-TA-TA-TT-CA-TA-TT-TA-TT-TT-TT-TADesign primers
427568TTTATAAAAATTTAAAAAATTTAAAAAAAADesign primers
443817AAAAAAAAATAAATATAAAAAAAATDesign primers
449611TTTTTTTATTTTTTTTTTTATTTTADesign primers
450527CATTTTTTTTCAAATTTTTTCGTTCTTTTTDesign primers
522274TAAAAATAAAATAAAAAATAAAAADesign primers
525228TATAGAAAAAAAAATAGAATAAAAGATAGAAAAAATDesign primers
538874AAAATTAAATCAAATACAATAAAAGDesign primers
549433TTTTTTTCTTTTTTATTATTTTTATDesign primers
563526CAAAAAAAATGTAAAAAAAAAGCAAAAAAATTADesign primers
577927CATTTATTATTAATTATTATTTTTTATTATDesign primers
580626TTTTTTTTTTATTTTTTTTTTATTTDesign primers
585705AATTTTTTAATAATTTTTTTTTAATTTCTTCATDesign primers
596414ATTTT-ATTTA-AGTTT-AGTTT-TTTTTDesign primers
598426AAATATAATAAAAGAAAATGAAATADesign primers
600454TT-TT-TT-TA-TT-TT-TT-AT-TT-TT-TA-TT-TDesign primers

Please help us improve this resource by reporting problems, suggestions etc.