Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Azospirillum lipoferum 4B

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
6367	CCCGGTGGTATGGGTCCGGGCGGCATGGGTCCGGGCGGCATGGGT	Design primers
14251	GCCGCCGCAGCCGCCGGCCCCGCC	Design primers
23775	CGTGTTCCCGCCGTCCCCCGTTCCCGCCGCCCCCCGTTCCCGCCGTCC	Design primers
28712	CCGCCGCCGCCATCGCCGCCGCCG	Design primers
38640	CAGCGTCCCCAGCGTCCGCAGCGTTCC	Design primers
46890	GCG-CCG-GCC-CCG-CCG-CCG-CCG-CCG	Design primers
105250	GCTGGCGGCGCTGGAGGCGCAGGCGGC	Design primers
123298	AGCCGGCGGCGAGGGCGGCGGCGACCCCGGCGGCGA	Design primers
164642	CCCATGACGCAGGCCCCCGCCACGCAGGCCCCCATCACGCAGGTG	Design primers
168907	CATCCGTGT-AATCCGTGT-AATCCGTGT	Design primers
173665	CCGCCACCGGCACCGACACCGCCGCCGTCAGCGCCA	Design primers
190950	CACGGTGTTCGGGGCAGGGCGTTCGGGGCACTGCGTTCGGGG	Design primers
195280	CGGCGCCGGAGCCGGGGCCGGAGC	Design primers
195469	GGCCGGGGCCGGGGCGGCAGCCGGGGCCGGGGCAGCGGCCGGAGCGGCGGCGGC	Design primers
204256	GGTGACGCTGGTGAAGCTGGTGACGCT	Design primers
211426	CGCCGGCTGCGCCGTCTGCGCCGGCCG	Design primers
215414	ATGGCGCCGCAATGGCACCGCAACGGCGCCACAATGGCGCCACC	Design primers
228057	GTGGGCGGTGCTGTGGGCGGAGCCGTGGCCGATGCT	Design primers
245231	TTCCGCCTTCTCCGTTTCGGACTTCTCAGTTTCCGACTTCGGCGT	Design primers
249425	GGCGCTGGGCACGGCGCTGGTCGCCGCGCTGGGCAG	Design primers
268414	CCTCGACCTTGGCCTCTACCTTCGCTTCAACCTTGG	Design primers
289116	CGGCGGCGGTGGCGGCCGCGGCAG	Design primers
355159	CCGGTCAGGTCGGCCCCGGTCAGGTCGGCTTCGCTCAGATCGGCCCCGGTCAGGTCGGCA	Design primers
355825	GTCAGGTCGGCGTCGGTCAGGTCGCAGCCGGTCAGGTTGGAGCCG	Design primers
371369	CGTCGCCCTCGCCTTCGCCCTCGC	Design primers
410278	GCTGCC-GGAGCC-GGAGCC-GGAGCC-GGAGCC-GGAGCC	Design primers
585124	CCCCCTCCCCATCCCTCTCCCGCT	Design primers
597416	CAAGGTGAAGGTCAAGGCCATGGT	Design primers
643870	ACGCCCGAGATCCGATCCGCCGAGATCCGATCCCCCGAGATTCGA	Design primers
702683	CGCACCCATCCCGGCGCCCATCCCGGCGCCCATCCC	Design primers
704758	GCCCCGGTCAGGTCGGCATCGTTCAGGTCGGCGCCGGTCAGGTCG	Design primers
716920	AGAAACCGCCTGAACCAACCGCCTGAACCAACCGCCTGA	Design primers
731489	GTTCTGAACGGCGCGGACCTGAGCGGCGCGCGTCTGAACGGCGCC	Design primers
764236	CGGCAGGTTG-GGGCAGGTTG-GGGCAGGTCG	Design primers
778368	CCG-CCG-CCT-CCG-CCA-CCG-CCA-CCG	Design primers
778546	CGCCGGAGCCGCCGAAGCCTGAGCCTCCGAAACCGGAGCCGCCCA	Design primers
783396	GCGGGCGCTGGCGCAGGCGCTGGC	Design primers
796206	ACCACGACCCCGACCACGACGACG	Design primers
835921	AGGGCGAGGCCGAGCGCGATGGCG	Design primers
842037	GGCGGTGAGATCTGG-GGCGGTGAGATCTGG-GGCCGTGAAACCTGG	Design primers
857413	CGGATCGGCTGATCGGCGGAACGG	Design primers
866694	ATCAGCGGGGAG-GGCAGCGGGGAG-GGCAGCGGGGAG	Design primers
882677	CCGGCAGTCCGGTCTGCGGCGGTCCAGTCTGCGGCGGTCCGATCTGCGGCGGTCCGATCTCCGGCAGTCCGGTCC	Design primers
886051	GGGTGC-CGGTGC-GGGTGC-GGGTGC	Design primers
905167	GCGAG-GCAGG-GGGCC-AGGCA-GGAGG-CGAGG-CCAGG-G	Design primers
916091	TGCAAGTCCGTTGGCGCAAGCCCGTTGGCGCAAGTCCGTTGGCGCAAGTCCGTTTG	Design primers
962018	GCCGGGACCGGGGCCGGCGGCGGG	Design primers
977630	GCAGCCGCTGCCGCAACCGCTGCCGCAGCC	Design primers
978098	CGGCAGGC-CGGCAGGC-CGGCAGAC	Design primers
1000916	GGGGGCGGCGGCGGGGGTGGGGGA	Design primers
1035157	CGGTGGCGGCGGCGGTCGCGGTGC	Design primers
1055007	GCTGATGATGATGCTGATGCTGGT	Design primers
1088561	AAGCTCGCGGTTCTGGCGCTTGCGGTTCTGGCGCTCGCGGTTCCG	Design primers
1093964	ACCGGT-TCCGGT-TCCGGT-TCCGGT	Design primers
1112852	CCCCATTCT-CCCCATTCT-CCCCATGCT	Design primers
1113019	CCGCCGA-GCGCCGA-GCGCCGA-GCGCCGA-GCGCCGA	Design primers
1119431	CCCGGCCAGCCCGCCCAGCCCGGCCAC	Design primers
1155314	GGCAAGGCGGAGAAGGACAAGGTGGAGAGGGGCAAGGTGGAGAAG	Design primers
1177653	TCACCGCCGGTCTCAACGCCAGTCTCAACGCCGGTG	Design primers
1183510	CAACCCTGATCCGCAGCCCCGATCCGCAGCCCCGATCCG	Design primers
1287821	GGGCCGGTTCGGGTGTCGGTTCGGGTGCCGGCTCGG	Design primers
1288038	CTCGGAAGCCGGTTCGGAAGCGGGTTCGGAAGCCGG	Design primers
1330186	TGGCCCAAAACCT-GCGCCCAAAACCT-GCGCCCAAAACCT-GCGCCCAAAACCT	Design primers
1345055	GCGGTGCCGGCGGTGCAGGCGCTGCCG	Design primers
1349156	GCCCGGCCA-TCCCGGCCA-TCCCGGCCA-TCCCGGCCA	Design primers
1406501	GCCCTTGTCGACGCCGACCTTGGCGACGCGGACCTTGTCCACGTC	Design primers
1415531	CAGCGGGTTGTGCCGGGGCGGGTTGCGCCGCAGTGGGTTGCGCTG	Design primers
1454669	CATGCCGCCGTGGTTCATGGAGCCGTGATTCATGCCGCCGTTGTT	Design primers
1464988	GCCGCTCCCGCTGCCGGTGCCGCC	Design primers
1473256	GGGCCGGAGCCGGCGCCGCGGCCG	Design primers
1487574	GGCGCTGGCGCCGGAGCTGCCGCT	Design primers
1492184	GGG-GCG-GAG-GCG-GCG-GCG-GGG-GCG	Design primers
1532812	ACGCTCCGGCCATGTGCTCCGGCCATACGCTCCGGCCCA	Design primers
1537401	ATGGCCGCCATGGGTATGGGGGCCGTGGGTGTGACCGCCATGGGAATGGCCGCCGTGGGT	Design primers
1546227	GCGGTC-ACGGTC-ACGGTC-ACGGTC	Design primers
1600750	CACTGCCCCCCTGCCCCACTGCGC	Design primers
1605465	ATGGTGGCCCGGACGGGGGCGGCCCGGACGATGGCGGCCCGGACG	Design primers
1605584	GGCCGTTCACCGGGAGCCGCTCACCGGGGGCCGCTCACCGGC	Design primers
1640288	CTTGCC-CTTGGC-CTTGGC-CTTGCC	Design primers
1699021	CCTGCCGATCCCCTGGCCGATCCCCTGGCCGATCCC	Design primers
1711832	GGGCGGCGGGGCGGCGGCGGTGGGGCGGCGGCG	Design primers
1713015	GGCGGCGGCGGGAGCGGCGGGGGC	Design primers
1809451	GCGGCCCCGGCCGCGGCGGCAGCC	Design primers
1822583	CGCCGCCGCCGAGGCCGCCGCCGC	Design primers
1832398	CTTGCCGGCGTCCGCCTTGGTGGCGTCGGCCTTGGTGGCGTCCGC	Design primers
1832447	GGAGCCTCGGTCTTGGTGGCTTCGGTCTTGGTGGCCTCGCTCTTG	Design primers
1867730	CGGACTTCCGGACATCCGGAATTC	Design primers
1891512	GGCGGTTCA-GGCGGTGCA-GGCGGTGCA-GGCGGTGCA	Design primers
1930602	CACCGCCGCCGCCAGCGCCGCCGC	Design primers
2028920	CCAGCAGCCGCAGCAGCCCCATCAGCCGCAGCAGCC	Design primers
2029211	GCAGCCGCAGCAGCACCCGCAGCA	Design primers
2040684	CTTGCGCGACTTGCCCTTGCGCGACTTGATCGTGCGGGACCTGCC	Design primers
2049491	GCTGGTGATGGTGCTGATGCTGGGGCCGGT	Design primers
2079958	GTCGTCGTGGCCATGATCGTCGTGGGAATGGTCGTCATGGGCGTG	Design primers
2167366	CCACCGGCCCGACATCCATGGGCCGGACATCCGCGGGCCAGACAT	Design primers
2198506	GTGGCCGACGCCGAGGTCGCCGACGCCGACATTGCCGACGCGGAG	Design primers
2199439	GTCGCGGAGGCGGAGGTCGCGGACGCCGAAGTGGCCGAAGCGGAG	Design primers
2237992	CTGCCGCCGCCGGTGCCGCTGACG	Design primers
2250862	GCCGGGACCGGGGCCGGGGCCGGA	Design primers
2281088	GCTGTCGCTGCCGCTGACGCTGGC	Design primers
2312984	GCATTGGTGTTGGCC-CTGTTGGTGTTGGCC-CTGTTGGTGTTGGCC	Design primers
2317290	CCTGGATCCGGCTCGGGATCCGGCTCAGGATCCGGC	Design primers
2341342	GGGAGGGTGGGAAGGTGGGAGAGT	Design primers
2368024	GGCCGCGGGCGCGGCTGCGGCCGG	Design primers
2379599	CGCCTG-CGCCTG-CTCCTG-CGCATG	Design primers
2399087	GTCGTTGGCGGCGGCGTTGGCCGCATCGTTGGCGGC	Design primers
2431468	TTATCCA-TCATCCA-TCATCCA-TCATCCA	Design primers
2442412	GTAGCGGACGGGGTGGCGGAGGACGGGGTGGCGGAGGACGGGGTG	Design primers
2477800	CTCCCGATTTCC-GGCCCGATTTCC-GGCCCGATTTCC-GGCCCGATTTCC	Design primers
2489068	CCGCCCCTGCCCCCGCCGCCGCCC	Design primers
2496646	CCCCTCCCCATCCCTCCCCCGCCCT	Design primers
2527948	CGGCCGCCCCGCCGCCCCGCCGCC	Design primers
2542420	CCACCGGCACCGCCAACGCCAGCG	Design primers
2571293	CGGCGGCGACGGCGTCGGCGGCCG	Design primers
2575985	CCTCAGCCCGCCCGGCCCTCAAACCGCCCGGCCCTCAAACCGCCCGAC	Design primers
2591317	TTAGTCCCGGCGCCGCTATTCCCGGCGCCTTTAGTTTGGGCGCCG	Design primers
2617022	CCGCGCAGGTCGGCG-GAGCGCAGGTCGGCG-GAGCGCAGATCGGCG	Design primers
2620623	CCCCGCCGCCCGGCCGCCCCGCCG	Design primers
2663655	TGGTGGCGCTGCTGGCGCTGGCGGCGC	Design primers
2668124	CGCGACGGTCGCCGTGGCGGTCGCCGTGACGGTCGA	Design primers
2684829	CCACCGCCGCCCCCGCCCCCGCCACCACCGCCGCCGCTGCCCCCG	Design primers
2711126	ATGCCGGTGCCGATGGCGATGCGG	Design primers
2736205	CCTGCG-CCTGCG-CCTGGG-CCAGCG	Design primers
2741350	GCCGATACCGATGCCAATGCCGAG	Design primers
2761356	GCGGCCAGGGCAGCGGCGGCCAGGGCAGCAGCAACCAGGGAAGCG	Design primers
2770624	ATCCAGCCGGTGGCCATCCAGCCGGTGACTGTCCAGCCGGCCGCC	Design primers
2797353	CCGGCCAGGAGGATGCCGGCACGGAGGACGCCGGCCAAGAGGACG	Design primers
2798449	CCGGGTCCCGGTCGGGGTCCGGCT	Design primers
2806761	ATCGGCCGGCATGGGCCCGCATCGGCCGCC	Design primers
2828656	CCGCCAGCGCCACCGCCGCCGCCCCGGCCA	Design primers
2873790	CAGCGGCAGCAGCAGCGCCAGCAG	Design primers
2897759	CGTCTTTCAGGCCATCGACTTTCAGGCTGTCGTCTTTCAGGCCGT	Design primers
2899854	CAGCGCCACCGCCTGCGCCACCGC	Design primers
2920581	GCCGATGACGCCGATGGCGCCGATCAC	Design primers
2943099	GGCCATCGCCGGCGGCCCCATCACCGGCGGCCCCATCACCGGCGG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

6367

CCCGGTGGTATGGGTCCGGGCGGCATGGGTCCGGGCGGCATGGGT