Microsatellites /Tandem Repeats database

Genome: Haemophilus influenzae 10810

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
60256AAAATAAAAAGAAAAATCAAAACADesign primers
104032AAC-CAC-AAC-AAC-GAC-AAC-AAC-CAC-AACDesign primers
175328TAGATTTATATTTAGATTTAGATTDesign primers
186441AAACATGATCATAAACACGACCATGACCATGATCATAAACACGAGCATDesign primers
282275CACTTACCAGCG-AGCTTACCAGCG-AGCTTACCAGCG-AGCTTACCAGCGDesign primers
294680AGAATT-AAAATT-AAAATT-AAAATTDesign primers
318497AGCACGACCAGAACGACCAGCACGACCDesign primers
338919TTCA-TTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGT-CTGTDesign primers
346213AAAAGACCGTCAGGTGCTAAAAGAAGGTCTGGTGCTAAAAGACGGTCAGGTGGTDesign primers
371862GCACCGTCGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCGTCADesign primers
475488AGAC-TTTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
499859CTCTTCTTGTCGTTG-AACTTCTTGTCGTTG-AACTTCTTGTCGATGDesign primers
561904TATCTAATCG-TCTTTAATTG-TCTTTAATTG-TCTTTAATTG-TCTTTAATTG-TCTTTAATCGDesign primers
588648TAAAATCAAAATTAAAAGTAAAATDesign primers
618887TTCAAAATTTTTTAAAAATTTTCAAAATAADesign primers
657395CTCAAATTGAGGCTCGAATTTAGGTTCAAATTTAGGCTCAAATTTAGGDesign primers
680436GGAG-TTTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
722991AAATTAAATAAGATTAAGTTAATTTDesign primers
788225CAGCAGCGGCAGCAGTAGCAGCAGDesign primers
808836TCTT-GGTT-GGTT-GGTT-GGTT-GGTT-GGTT-GGTT-GGTTDesign primers
867003CTAT-TTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTGDesign primers
879043TTTTAAGTTTAAATTTAATTTTAATTTTAATTTTAADesign primers
922746CTTG-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAADesign primers
1076184AGTACC-AGTACC-ACTACC-ATTACCDesign primers
1137399ACCAAAACCAGCTGAGCAATCCAAACCGGCTGAGCAATCGAAACCAGCTGATCADesign primers
1167537TCTTTG-TCTTTG-TCTTTG-TCTTTT-TCTTTTDesign primers
1167797ATTGGTTGTTGTATCGGTTTTTGTACTGGCTGTTGTACTGGTTGTTGCATCGGTTGTTGCATTGGCTGTTGCATTGGTTGTTTTDesign primers
1246757TGCCATTGCCGTTGCCGTTGCTATDesign primers
1250198ATTGGCTTTGGCATTGGGATTGGGDesign primers
1347922ATTTTT-TTCCTT-TTCCTT-TTCCTT-TTCCTT-TTCCTT-TTCCTT-TTCCTT-TTCCTTDesign primers
1434468TGCTGATGTTGAAGCTGAAGCTGADesign primers
1442635TTTTGGTGATATGTTCGGTGATATTTTTGGCGATATDesign primers
1533681ATGAAATAACTA-ATGAAATAACTA-ATGATACAACTADesign primers
1557080CAGCAACAGAAACAGCATCAGAAAAAGCAADesign primers
1571926GAAATGTAAAGATTTGTAAAGAAATGTAAADesign primers
1628141ATGA-ACCG-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCADesign primers
1709950AGCA-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
1740719CTAT-GCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
1862244AATACAAA-TAATCAAA-TAATCAAA-TAATCAAA-TAATCAAA-TAATCAAADesign primers
1960233TC-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AADesign primers
1971512AGAATT-AAAATT-AAAATT-AAAATTDesign primers

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