Microsatellites /Tandem Repeats database

Genome: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
203CACCACCACCATTACCACCATCACDesign primers
68488TTT-TAA-TTA-ATT-TAA-TTA-TTT-TTA-TTADesign primers
198421GGCGAGATGGATCATGGCAACATGGATCACAGCGGGATGAATCATDesign primers
245488CGGCGGTAACGGCGGCAACGGCGGTCADesign primers
507032GCGAAAGAGAAAGCGGAAGCGGAADesign primers
663924TGGTGGTGGTCGTGGTGCTGGCGGDesign primers
1095405GCGGCAGCCGCATCGGCAGCCGCADesign primers
1095636GCGGCAGCCGCATCGGCAGCCGCADesign primers
1119726GGAGCCGGAGCTGGTGCCGGAGCTDesign primers
1194094ACGAAAAATAACCAGAAATAACAAAAAACADesign primers
1327087GCGGCAGCCGCATCGGCAGCCGCADesign primers
1327318GCGGCAGCCGCATCGGCAGCCGCADesign primers
1969681GAAAATTTCGGAAATTTCGGAAATTTCDesign primers
2064596TACGGCAGCGGC-GTCGGCAGCGGC-GTCGGCAGCGGCDesign primers
2382435TGAACGGGGAAGCAACGGGGAATAATCGGGGAADesign primers
2383561TTTGATGTA-GTTGATGTA-GTTGATGTADesign primers
2403044GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
2623780ACGCCGTCGCACGCCGCCTCACGCAGTTGCDesign primers
2782413TCAATA-GCAAGG-GCAAGG-GCAAGG-GCAAGG-GCAAGG-GCAAGG-GCAAGG-GCAAGGDesign primers
2787785GCTGCGGCTGCCGATGCGGCTGCCDesign primers
2788015CGCTGCGGCTGCCGATGCGGCTGCDesign primers
2820081GCCGTTACCTGATTCGGGTAAACT-TTTCTTACCTGATTCGGGTAAACT-TTTCTTACCTGATTCGGGTAAACTDesign primers
2905997TTGTACCACTTGTCCCACCTGTACCACDesign primers
2926772ATAGCCGCGATTTGCCGCGATTTGCCGCGADesign primers
3070434TATGGGTTTATGTGAGTTTATAAGGGTTTTDesign primers
3155188GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3204341AAACCA-CCATCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCADesign primers
3484388TCGCTT-TCGCTT-TCTCTT-CCGCTTDesign primers
3485155TCGCCGCCGTCGCCGCCATCACCGCCGDesign primers
3736141ATGCAGACGCAGATGCAAACGCAGDesign primers
3826475CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
4030111GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
4104577TGATCATGTTCACGATCATGACCADesign primers
4149019CTGGCGCTGGTGCCGGCGCTGGTGDesign primers
4263824TCATTATAATTAACATTATCAATADesign primers
4352969CGCGGTAAATCTCGATAAATGGCGGTAAAADesign primers

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