Microsatellites /Tandem Repeats database

Genome: Rickettsia rickettsii str. Hino

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
109808GTG-GCG-GTG-GTG-GTG-GTG-GTG-GTGDesign primers
176378AAAGATGAAGATAAAAATAAAAATDesign primers
354370AGAAGAGATGATAAGAGACGACAAGDesign primers
654139AAA-AGA-AAT-AGA-AGA-AGA-AAA-AGA-AAA-AGADesign primers
659250AATGAAAATTAATATGAAAATGCADesign primers
703081AATTTTAATTTAAATATTAATTTADesign primers
770223TTAAAGAAGCAAATCTAAAACAAGCGAATCTAAAAGCAGCAAATCDesign primers
817113ATATT-AAATT-ATATT-ATGTT-TTATTDesign primers
857262GGT-GGT-GGA-GGT-GGA-GGT-GGA-GGTDesign primers
1124534ATATTTAAAATATTTAGAATATATAAADesign primers
1225428TTATAGAATTTTAGAATTATATAADesign primers

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