This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 60247 | CATCATTGACCATGCTCCAGA-TATCATTGACCATGCCCCAGA-CATCATTGACCATACCCCAGA-CATCATTGACCATACCCCAGA-CATCATTGACCATGCCCCAGA-CATCATTGACCATGCTCCAGA-CATCATTGACCATACCCCAGA-CATCATTGACCATACCCCAGA | Design primers |
| 60416 | ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATACCTCAGAC-ATCATTGACCATGCCTCAGAC | Design primers |
| 255245 | GCTCGACCTAGCTTTCTACTT-GCTCGACCTAGCTTTCTACTT-GCTCGACCTAACTTTTTACTT-GCTCGACCTAGCTTTTTACTT-GCTCGACCTAGCTTTCTACTT-GCTCGACCTAGCTTTCTACTT-GCTCGACCTAGCTTTTTGCTT-GCTCGACCTAACTTTTTACTT | Design primers |
| 362195 | TAACTAGTTTACCTCCAGACCTAACTAGTTTACTTCCAGACATAACTAGTTTACCGCCTGACCTAACTAGTTTACTTCCAGACATAACTAGTTTACTTCCAGACCTAACTAGTTTACCTCCTGACCTAACTAGTTTACCTCCAGACATAACTAGTTTACCTCCAAACCTAACTAGTTTACTTCCAGACCTAACTAGTTTACCGCCAGACCTAACTAGTTTACCTCCTGACCTAACTAGTTTACCGCCAGACCTAACTAGTTTACCTCCTGACCTAACTAGTTTACTTCCAGACA | Design primers |
| 604547 | CCATCCCGAGGACTTACCCTAA-TCATCCCGAGGACTTACCCTAA-TCATCTCGAGGACTTACCCTAA | Design primers |
| 604614 | CATCTTGAGGACTTACCCTAAT-CATCTTGAGGACTTACCCTAAT-CATCTTGAGGACTTACCCTAAT-CATCTTGAGGACTTACCCTAAT | Design primers |
| 994529 | CCATCAGCG-CCATCAGCG-CCATCAGCG | Design primers |
| 1117721 | TAATTTAAACG-GGATTTAAACG-GGATTTAAACG-GGATTTAAACG-GGATTTAAACG-GGATTTAAACG-GGATTTAAACG-GGATTTAAACG | Design primers |
| 1209702 | ACCTCCAGACCGAACTAGTTTACCTCCAGACCGAAGCAGTTTACCTCCAGACCGAACTAGTTTACCTCCAGACCAAACTAGTTTACCTCCAGACCAAACTAGTTC | Design primers |
| 1209808 | GCTCCAGACCAAACTAGTTCACCTCCAGACCGAACTAGTTCAGCTCCAGACCGAACTGGTTCA | Design primers |
| 1209874 | CCAGACCGAAGCAGTTCACCGCCAGACCGAACTAGTTCACCGCCAGACCGAAGCAGTTTACCT | Design primers |
| 1209970 | AGTTCACCTCCAGACCGAACTAGTTCACCTCCAGACCAAACTAGTTCAGCTCCAGACCAAACTAGTTCACCTCCAGACCAAACTAGTTCACCTCCAGACCAAACTAGTTCACCTCCAGACCAAACTAGTTCACCTCCAGACCGAAGC | Design primers |
| 1383245 | TCCAGACCGAACTAGTTCACCGCCAGACCGAACTAGTTTACCTCCAGACCGAACTAGTTCACTTCCAGACCGAACTAGTTCACCGCCAGACCGAACTAGTTTACCTCCAGACCGAACTAGTTCACTTCCAGACCGAACTAGTTCACTTCCAGACCGAACTAGTTCACCGCCAGACCGAACTAGTTCACCGCCAGACCGAACTAGTTTACCTCCAGACCGAACTAGTTTACCTCCAGACCGAACTAGTTTACTTCCAGACCTAACTAGTTCACT | Design primers |
| 1478899 | CCAAACCGAACTAGTTCACCT-CCAGACCGAACTAGTTTACCT-CCAGACCGAACTAGTTCATCT-CCAGACCGAACTAGTTCATCT-CCAGACCGAACTAGTTCACCT-CCAGACCGAACTAGTTCACCT-CCAGACCGAACTAGTTTACCT-CCAGACCGAACTAGTTTACCT | Design primers |
| 1879884 | GTCTGGAGCTAAACCAGTTAGGTCTGGAGGTAAACCAGTTAGGTCTAGAGCTAAACTAGTTAGGTCTGGAGCTAAACCAGTTAGGTCTGGAGGTAAACCAGTTAGGTCTAGAGCTAAACTAGTTAGGTCTGGAGCTAAACCAGTTAGGTCTGGAGGTAAACCAGTTAG | Design primers |
| 1944536 | AGACCGAACTGGTTCACCTCCAGACCGAACTAGTTCACCTCCAGACCAAACTAGTTCACCTCCAGACCGAACTGGTTCACCTCCAGACCAAACTAGTTCACCTCC | Design primers |
| 1944642 | GACCAAACTAGTTCATCTCCA-GACCAAACTGGTTCACCTCCA-GACCAAACTGGTTCACCTCCA-GACCAAACTGGTTCACCTCCA | Design primers |
| 1949196 | TCTTTTACCAAC-CCTTTTACCAAC-CCTTTTACCAAC | Design primers |
| 2517811 | AGGTACCTCATGGGGTTTAGGGACGTACCTCATGGGGTTCAGGGACGTACCTCATGGGGTTCAGGG | Design primers |
| 2536019 | ACCTCCGCACCGAACTGGTTT-ACCTCCAGACCGAACTGGTTT-ACCTCCGCACCGAACTGGTTT-ACCTCCGCACCGAACTAGTTT-ACCTCCGCACCGAACTGGTTT | Design primers |
| 2536132 | ACCGAACTAGTTTACCTCCGC-ACCGAACTAGTTTACCTCCGC-ATCGAACTGGTTTACCTCCGC-ACCGAACTAGTTTACCTCCAG | Design primers |
| 2677515 | ACCCCTCCTGATGGGTATGGGAACCCCTCTCGATGGGTATGGGAACCCCTCTTGATGGGTATGGGAACCCCTCCTGATGGGTATGGGAACTCCTCCTGATGGGTATGGGAACTCCTCCTGATGGGTATGGGAACTCCTCCTGATGGGTATGGGAATCCCTCCTGATGGGTATGGAA | Design primers |
| 2827578 | TCA-TCA-TCA-TCG-TCA-TCG-TCA-TCA-TCG-TCA-TCA-TCA-TCA-TCA-TCA-TCA-TCA-TCA-TCG-TCA-TCA-TCA-TCA-TCA-TCA | Design primers |
| 2928573 | ACCGAACTAGTTCACCTCCAG-ACCGAACTAGTTCACCTCCAG-ACCGAAGCAGTTCACCTCCAG-ACCGAACTAGTTCACCTCCAG-ACCGAACTAGTTCACCTCCAG-ACCGAACTAGTTCACCTCCAG-ACCGAACTAGTTCACCTCCAG-ACCGAACTAGTTTACCTCCAG-ACCGAAGCAGTTCACCTCCAG-ACCGAAGCAGTTCACCTCCAG-ACCGAACTAGTTCACCTCCAG-ACCGAACTAGTTCACCTCCAG-ACCGAAGCAGTTCACCTCCAG | Design primers |
| 3247130 | AAAAGTTATGTCTGGAAGTAA-ACTAGTTATGTCTGGAAGTAA-ACTAGTTATGTCTGGAAGTAA-ACTAGTTATGTCTGGAAGTAA-ACTAGTTATGTCTGGAAGTAA | Design primers |
| 3247236 | CTAGTTATGTCTGGAGGTAAACTAGTTATGTCTGGAAGTAAACTAGTTATGTCTGGAAGTAAACTAGTTGTGTCTGGAAGTAAACTAGTTATGTCTGGAAGTAAACTAGTTAGGTCTGGCGGTAAACTAGTTAGGTCTGGCGGTAAA | Design primers |
| 3388046 | CGATGTAGACGTCGATGTAGATGTAGATGTAGACGT | Design primers |
| 3388094 | TGATGTAGATGC-GGATGTAGATGC-CGATGTAGATGC-TGATGTAGATGC-TGATGTAGATGC | Design primers |
| 3529238 | TGAACCAGTTCGGTCTGGGGGTGAACCAGTTCGGTCTAGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTAGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGGGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGGGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGGGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGG | Design primers |
| 3551227 | AAGTTCGGTTTGGAGGTGAAC-TAGTTCGGTCTGGAGGTGAAC-TAGTTCGGTCTGGAGGTGAAC-TAGTTCGGTCTGGAGGTGAAC-TAGTTCGGTCTGGAGGTGAAC | Design primers |
| 3551333 | GGTTCGGTCTGGAGGTGAACT-AGTTCGGTCTGGAGGTGAACT-AGTTCGGTCTGGAGGTGAACT-GGTTCGGTCTGGAGGTGAACT-AGTTCGGTCTGGAGGTGAACT-GGTTCGGTTTGGAGGTGAACT-AGTTCGGTCTGGAGGTGAACT-AGTTCGGTCTGGAGGTGAACT-GGTTCGGTTTGGAGGTGAACT-AGTTCGGTCTGGAGGTGAACT-AGTTCGGTCTGGAGGTGAACT-GCTTCGGTCTGGAGGTGAACT-AGTTCGGTCTGGAGGTGAACT-GCTTCGGTCTGGAGGTGAACT | Design primers |
| 3642925 | TCTCTG-TCTCTG-TCTCTG-TCTCTG | Design primers |
| 3729226 | CCTGAAGCAGTTCGGTCTGGA-GGTGAAGCAGTTCGGTCTGGA-GGTGAAGCAGTTCGGTCTGGA-GGTGAAGCAGTTCGGTCTGGA-GGTGAAGCAGTTCGGTCTGGA-GGTGAAGCAGTTCGGTCTGGA | Design primers |
| 3729353 | GTGAACCAGTTTGGTCTGGAGGTGAAGCAGTTCGGTCTGGAGGTGAAGCAGTTCGGTCTGGAGGTGAAGCAGTTCGGTCTGGAGGTGAAGCAGTTCGGTCTGGAGGTGAAGCAGTTCGGTCTGGAGGTGAAGCAGTTTGGTCTGGAGGTGAACCAGTTCGGTCTGGGGGTGAACCAGTTTGGTCTGGAGGTGAAGCAGTTCGGTCTGGAG | Design primers |
| 3729572 | TTCGGTCTGGGGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTTGGTCTGGAGGTGAACCAGTTCGGTCTGGGGGTGAACCAG | Design primers |
| 3729659 | GGTCTGGAGGTGAAGCAGTTCGGTCTGGAGGTGAACCATTTCGGTCTGGGGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTTGGTCTGGAGGTGAACTAGTTC | Design primers |
| 3740832 | AAGTTCGGTTTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAAC | Design primers |
| 3740896 | GGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACT | Design primers |
| 3773371 | GTCTGGCGGTAAACTAGTTATGTCTGGAAGTAAACTAGTTATGTCTGGCGGTAAACTAGTTAGGTCTGGCGGTAAACTAGTTATGTCTGGGGGTAAACTAGTTAT | Design primers |
| 3833775 | ACCGAACTAGTTCACCTCCAG-ACCGAAGCAGTTCACCTCCAG-ACCGAAGCAGTTCACCTCCAG-ACCGAACTAGTTCACCTCCAG-ACCAAACTAGTTCAGCTCCAG-ACCAAACTAGTTCACCTCCAG-ACCAAACTAGTTCAGCTCCAG-ACCAAACTAGTTCAGCTCCAG-ACCAAACTAGTTCACCTCCAG-ACCAAACTAGTTTACCTCCAG-ACCAAACTAGTTCAGCTCCAG | Design primers |
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