Microsatellites /Tandem Repeats database

Genome: Vibrio cholerae IEC224

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
2893CAATGAACCACAACCAACCATAATCAACCADesign primers
137101CGTTAA-CAGAAA-CAGAAA-CAGAAA-CAGAAA-CAGAAA-CAGAAA-CAGAAA-CAGAAADesign primers
204049CTTATGGGTTTTAGCACTTATGGTTTTTCGCGCCTATAGGTCTTAGCADesign primers
463318TGCCTATGTCTATGCCTATGCTTADesign primers
467118GTCGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACCDesign primers
467375TGATGGTGG-TGATGGTGG-TGATGGCGGDesign primers
532258CTTGTCG-ATTGTCG-ATTGTCG-ATTGTCGDesign primers
551308CGTCGCCATCTTCGTCTTCATCTTCGTCTTCATCTTDesign primers
637792TGC-TGG-TGA-TGG-TGC-TGC-TGC-TGCDesign primers
687101TTAAAAACAGATTGCTCTTACAAATAGATCGCTCTTAAAAACAGATCGCCADesign primers
839029TTGTTGTGTTTATTGTGTCTGTTGTGTDesign primers
839302TGCGGATGGCG-TGCGGATGGCG-TGCGGATTGTGDesign primers
857062ATTTACCTAAAACGA-ATTTACCTAAAACGA-ACATACCTAAAACCADesign primers
1050994TGTAAATAAATGTAACTCAATGAAAATCAADesign primers
1172181GTTGGTTTACTGATCAGTTGATTTACTGATTCGTTGTTTTACTCATTADesign primers
1248910TTTTTGCTGTTTATTGTTTGAAGCTGTTTATTGTTTGAAGCTGTTTATTGTDesign primers
1565216GAAATCA-AAAATCA-AAAATCA-AAAATCADesign primers
1603466AA-AA-AA-TA-AA-AA-AA-AA-CA-GA-AA-AADesign primers
1675039TGAACGCATTGACTGTGAATGTGTTGACTGTGAACGCATAGATTGDesign primers
1732208CCATTAAACCTTAGCCATAAAACCCTAGTCATAAAACCTTAGCCATAAAACCTTAGDesign primers
1824817AACGCGATA-ATCCAGATA-ATCCAGATA-ATCCAGATA-ATCCAGATA-ATCCAGATADesign primers
1870983GAGATGAC-TAGATGAC-TAGATGACDesign primers
1878616GGTTACTTTTTTAGATAGTGACTTTTTTAGATAGTGACTTTTTTAGGTDesign primers
2013651AAAAATAAAAAAATTAAAGAATAADesign primers
2605063CAAAAACAAAGACAAAACCACAAADesign primers
2630869TGCAGCTGCCGCTGGAGCCGCAGCDesign primers

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