Microsatellites /Tandem Repeats database

Genome: Rickettsia prowazekii str. RpGvF24

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
20442TTAAATATTCTAAATATTTAAAATATTDesign primers
22875AAAATAAAAATAAATAAACTAAAAADesign primers
38038AT-AT-GT-AT-GT-GT-AT-AT-TT-AT-AT-ATDesign primers
92688TGG-TGG-TGG-TGG-TGG-AGG-TGG-TGG-TGG-CGGDesign primers
190736CATCAACTTCAACATTAACATCATDesign primers
237950AGTTACTGTAGTTATTGTTGTTACTGTDesign primers
341541TAATTAAATTTAATATTATTTAAATDesign primers
450265TCTTAG-TGTTAG-TATTAG-TATTAG-TATTAGDesign primers
498205AAATTAACTTATATTTAATTAATTTDesign primers
560796GATACTGGAGGTCGAGAC-GATACTGGAGGTCGAGAC-GATACTAGGGGTCGAGGCDesign primers
562541AAATATTAAAATTTTAAAAAATTADesign primers
569625GTATAGATATAGGTATAAGTATAADesign primers
593495TTCTTATAATAATATTATTTATAATTATATTTATTGTACTAATATDesign primers
612167TATATTAATTATAATAATTTTATTAATDesign primers
794618TTAATTTTTATTATAATTTTAACTTTAATTDesign primers
798389CCACCCATG-CCACCCATG-CCGCCCATGDesign primers
812731TTTTTTTATTTTTTTTATTTTTTTADesign primers
848070TATTTTAATTTTTTTTATTATATTTDesign primers
896114TTTAGGATTTTAGGACTTTAGAATDesign primers
898800ATACCTTGTTGTATACCTTTTTCTACACCTTGTTGTDesign primers
950205TTATT-ATATT-TTATA-TTATA-TTATA-TTATADesign primers
992604AAAACTAAATAATACTAAATTAAACGAAATDesign primers
1014358ATATTAAATTATATAATTTTCTATTATATADesign primers
1064648TAACAATAACAAACAGTAACAAAAAATAACDesign primers

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