Microsatellites /Tandem Repeats database

Genome: Bacillus thuringiensis serovar chinensis CT-43

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
202349CTAATTATAA-CTAATTATAA-CTAAATATAA-CTAGTTATAADesign primers
443920CCAGAACCATTGCCACCAGAACCGTTGCCACCAGAACCGTTGCCADesign primers
460531TATTTT-TATTTT-TATTTT-TATTTT-TATTTTDesign primers
924477CCGGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGA-ACAGAAAAACCAGGTGAAGGADesign primers
983099ACAGAG-ACAGAG-ACAGAG-ACAGAGDesign primers
1093383AAAAACCTGGAACACCAGATCCAGAAAAGCCTGGAACACCAGATCCAGAAAAACCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAAACCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGDesign primers
1093532CCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAAACCTGGAACACCGAATCCAGAGAAACCTGGAACACCGAATCCAGAAAAADesign primers
1225834CCAGTCGGT-CCAGTCGGT-CCAGTCGGTDesign primers
1234088AGAACAGCC-AGAACAGCC-AGAACAGCC-AGAACAGCCDesign primers
1283654ACAAAAGAAAGTAGAAGAACAGAAGAAAGTAGAAGAACAGAAGAAAGTAGAAGADesign primers
1283709CAGAAGAAAGCAGAAGAA-CAGAAGAAAGCAGAAGAA-CAGAAGAAAGTAGAAGAA-CAGAAGAAAGCAGAAGAA-CAGAAGAAAGCAGAAGAADesign primers
1283810AGAAGAACAGAAGAAAGC-AGAAGAACAGAAGAAAGC-AGAAGAACAAAAGAAAGCDesign primers
1523787TTTCTTAGCATCTTCTTCAGCTTTTTTCTTGGCCTCTTCTTCAGCTTTCTTCTTAGCTTCTTCTTCAGCTTTTTTCTTAGCTTCTTCTTCAGCTTTDesign primers
1530590TCATGGACA-TCATGGACA-TCATGGACADesign primers
1934017AATAAC-AATAAC-AATAAC-AATAACDesign primers
2143606GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACT-GGAACAGAAGGAACT-GGAACAGGGGGAACT-GGAACAGGAGGAACT-GGAACAGGAGGAACTDesign primers
2371851GGAGTAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACADesign primers
2371923GGAGCAACAGGAGCAACGGGAGTAACAGGAGCAACGGGAGCAACAGGAGCAACGDesign primers
2372045AACAGGAGCAACGGGAGTAACAGGAGCAACGGGAGCAACAGGAGCAACGGGAATDesign primers
2372243AACGGGAGT-AACGGGAGT-AACGGGAGTDesign primers
2372328GGAGTAACG-GGAGTAACG-GGAGTAACGDesign primers
2374016CGACAGGTC-CAACAGGTC-CAACAGGTC-CAACAGGTC-CAACAGGTC-CAACAGGTCDesign primers
2374168GGAGCAACAGGAGTAACA-GGAGCAACAGGAGTAACA-GGAGCAACAGGAGCAACA-GGAGCAACAGGAGCAACADesign primers
2374289CAACAGGTC-CAACAGGTC-CAACAGGTCDesign primers
2638677CCAACGGGAGTAACGGGT-CCAACGGGAGTAACGGGT-CCAACAGGAGTAACGGGT-CCAACAGGAGTAACGGGT-CCAACAGGAGTAACGGGTDesign primers
2965219GCTTTTTCTTCTTCTTTAGCTTTTACTTCTTCTTTAGCTTTTACTTCTTCTTTADesign primers
2994788GATATATTTAA-TATATATTTAA-TATATATTTAADesign primers
3105797CCTGGCCAACCACCATGTCCGCCTTGCCAGCCACCATGTCCGCCTTGCCAACCACCGTGTCCGDesign primers
3223744TTTGGTTTTTGTACTTCTTCCTTAGGTTTTTGTACTTCTTCCTTAGGCTTTTGTACTTCTTCCDesign primers
3246863GGTACTGGT-GGTACTGGT-GGTACTGGTDesign primers
3773973GTTGGACCT-GTTAGACCT-GTTGGACCT-GTTGGACCT-GTTGGACCT-GTTGGACCT-GTTGGACCT-GTTGGACCTDesign primers
4532759GGTTTTTCTACTTCTGGTTTTTCTGCTTCTGGTTTTTCTACTTCCGGTTTTTCTACTTCTDesign primers
4894180GGTTCTTTCGGATCTTTCGGTTCTTTCGGTTCTTTCGGTTCTTTCGGTTCTTTCGGTTCTTTCGGATCTTCCDesign primers

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