Microsatellites /Tandem Repeats database

Genome: Bacillus thuringiensis serovar chinensis CT-43

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9074ATAATATACTATGATATATTATAAADesign primers
171361GCTAAGGTTGAAGCTAAGATAGAAGCTAATGCTGAADesign primers
177228CGTCTTTTAAGTCTTTTACATCTTTTADesign primers
202347ATCTAATTATAACTAATTATAACTAAATATAACTAGTTATDesign primers
380651AGAAAGCGAAAGTGAAAGCGAAAGTGAAAGDesign primers
443709ATTGCCACCTTGAGAGCCATTACCGCCGTGAGAGCCATTACCGCCGTGAGAGCCDesign primers
443788GAACCATTGCCGCCAGAGCCACTGCCACCAGAACCGTTACCACCAGAACCGTTACCACCAGAGCCACTGTCGCCAGAACCGTTACCACCAGAGCCACTGTCGCCAGAACCGTTACCGCCAGAACCGTTACCGCCAGAACCATTGCCACCAGAACCGTTGCCACCAGAACCGTTGCCACCAGAACCACTGCCGTCADesign primers
444019TTGTCACCAGAGCCACTGCCACCAGAACCATTGCCGCCAGAGCCADesign primers
444100CCAGAACCGTTACCGCCGGAACCATTGCCGCCAGAGCCGCTGCCGCCAGAACCACTATCGDesign primers
446421GGCGAAGGTGAAGGCGATGACGAADesign primers
460530GTATTT-TTATTT-TTATTT-TTATTT-TTATTTDesign primers
538313AGAAAAAGCAAAAGAAAAAGGAAADesign primers
551283AAATGAGTAAAAGAGTAAATGAATDesign primers
694746AAAAAACAAAAATAAAAAACAGAAADesign primers
742268AGAACCTGCAAAACCTGCAAAACCTGCDesign primers
763712TCTGCTTCTGCATATGCTTTTGCTDesign primers
839640TTTTTATTTTTTCTTATTTTTTTTCDesign primers
851801TTGAGCTTTAGCTGCTTCTTTAGCTTTGGCCGCTTCACGAGCTTCAGCTGCTTCTTGAGCCTTAGCCGCTTGDesign primers
851887CTTGAGCTTTAGCCGCTTCACGAGCTTTAGCTGCTTCTTGAGCTTTAGCCGCTGDesign primers
851994TCTTGAGCTTTAGCTTCTGCTTGAGCTTCAGCATCTGCCTGAGCTTTAGCTGCTTCTTGAGCCTTAGCTGCTDesign primers
872853AAAGAAGTGGACAGAAGGGGAAAGAACTGTDesign primers
924471AAAGGGCCGGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGT-GAAGGAACAGAAAAACCAGGTDesign primers
982572CCTAAACAAGAAAATACTAAACAAGAACCTGTTAAACAAGAAAACACTAAGCAAGAGAATDesign primers
983097AAACAG-AGACAG-AGACAG-AGACAGDesign primers
1026694TGTTCGTAATTCTTCAGCTTGCATTTGTAGTTCTTCAGCTTGCGTTTGTAATTCTTCTGATTGDesign primers
1079440AAAGATAAAAAAGACAAAAAAGGTAAADesign primers
1093381GAAAAAACCTGGAACACCAGATCCAGAAAAGCCTGGAACACCAGATCCAGAAAAACCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAAACCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCDesign primers
1093526GAAAAGCCTGGAACACCGAATCCAGAAAAACCTGGAACACCAGATCCAGAAAAACCTGGAACACCGAATCCAGAGAAACCTGGAACACCGAATCCADesign primers
1113237CAAGAGATACAAAGATATACGAAGAGATAADesign primers
1137043TAGTTT-TATTTT-TACTTT-TACTTT-TACTTTDesign primers
1225587TGGTCCAGT-CGGTCCAGT-CGGTCCAGTDesign primers
1225832CACCAGTCGGTCCAGTCGGTCCAGTCGGTCCAGTCGGCCCAGTCGGTCCAGTTGGCCCAGTCGGCCCAGTCGDesign primers
1234055AGAAGAAGAGGAAAAAGAAGAACADesign primers
1234082AGAGCAAGA-ACAGCCAGA-ACAGCCAGA-ACAGCCAGA-ACAGCCAGA-ACAGCAAGADesign primers
1283648GGAAGGACAAAAGAAAGTAGAAGAACAGAAGAAAGTAGAAGAACAGAAGAAAGTDesign primers
1283703GAAGAACAGAAGAAAGCA-GAAGAACAGAAGAAAGCA-GAAGAACAGAAGAAAGTA-GAAGAACAGAAGAAAGCA-GAAGAACAGAAGAAAGCA-GAAGAACAAAAGAAAGTA-GAAGAACAGAAGAAAGCA-GAAGAACAGAAGAAAGCA-GAAGAACAAAAGAAAGCGDesign primers
1299367TTCAGCAGGCTTTTGCTCAGCTGGTTTTTGTTCAGCAGGTTTTTGDesign primers
1439883GAAGAAGAAAAGCGAAGAAAAGAAGAAGAAAAGAAAAGGCAAGAAGAAGAAAAGAAAAGGCAADesign primers
1473089AAATATTT-AAATATTT-AAGTATTTDesign primers
1474849AAAAATAAAATAAAAATAAAAAGAADesign primers
1523783GTTGTTTCTTAGCATCTTCTTCAGCTTTTTTCTTGGCCTCTTCTTCAGCTTTCTTCTTAGCTTCTTCTTCAGCTTTTTTCTTAGCTTCTTCTTCAGDesign primers
1523933GTTGTTGTTCTTGTTGCTGTTCTTGTTGTTDesign primers
1530589GTCATGGAC-ATCATGGAC-ATCATGGACDesign primers
1560211AGTTTAGTATTGTTTAGTGTAGTTADesign primers
1617051TTTTTATATTTTTGTATTTTTCTADesign primers
1694555AAGAAAAGGAAAGAAAAGCAAAGCADesign primers
1698007TATTAAATTATATTTAAATAAATTAAATTADesign primers
1711630TTGTAGGTTTTTGTATGATTTTGTAGGTTCDesign primers
1737892ATTGTTTTTGTTATTTTTATTGTGDesign primers
1895374TATATAATATATATTTATAAGTTATATATTTATATTATATATATADesign primers
1934016AAATAA-CAATAA-CAATAA-CAATAADesign primers
2143602TACCGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGAGG-AACTGGAACAGGAGG-AACTGGAACAGAAGG-AACTGGAACAGGGGG-AACTGGAACAGGAGG-AACTGGAACAGGAGGDesign primers
2260406CAAGAAGAATTAAAGAAACAAGAAGAACTGAAAAAACAAGAAGAGCAAAAGAAADesign primers
2260472AAGAAGCAAGAAGAACAAAAGAAACTAGAAGAGCAAAAGAAACAAGAAGAAGAAAAGAAACAAAATGAACAADesign primers
2280467GGATTAGCATTAGGACTAGGGTTADesign primers
2371818CCAACAGGAGCAACGGGA-GTAACAGGAGCAACGGGA-GTAACAGGAGCAACAGGA-GCAACAGGAGCAACAGGA-GCAACAGGAGCAACAGGA-GCAACGGGAGCAACAGGA-GCAACAGGAGCAACGGGA-GTAACAGGAGCAACGGGA-GCAACAGGAGCAACGGGADesign primers
2371990CAACAGGAGCAACGGGAATAACGGGAGCGACGGGAATAACGGGAGCAACAGGAATAACAGGAGCAACGGGAGTAACAGGAGCAACGGGAGCAACAGGAGCAACGGGAATAACGGGAGCAACAGGAACAACGGGAGTAACGGGAGCAACAGGAGTAACAGGAGCAACGGGAATAACGGGAADesign primers
2372206CAACGGGGGCAACGGGAATAACGGGAGCAACAGGAACAACGGGAGTAACGGGAGDesign primers
2372261AACGGGAGTAACGGGAGCAACGGGTGTDesign primers
2372289ACAGGAATAACAGGAGCAACGGGAATAACGGGAGCAACAGGAGTAACGGGAGTADesign primers
2372400GGAGCAACAGGAGCAACGGGAGTAACADesign primers
2374010CAGGGGCGA-CAGGTCCAA-CAGGTCCAA-CAGGTCCAA-CAGGTCCAA-CAGGTCCAADesign primers
2374166GTGGAGCAACAGGAGTAA-CAGGAGCAACAGGAGTAA-CAGGAGCAACAGGAGCAA-CAGGAGCAACAGGAGCAADesign primers
2374239AGGAGCAACAGGTTTAACAGGAGCAACAGGCCCAACAGGAGCAACAGGAGCAACDesign primers
2374294GGTCCAACA-GGTCCAACA-GGTCCAACADesign primers
2488232TTTTTTATTTTGTAGTTTTTATTTTTAADesign primers
2530491AAAGATAAAAATATAAAACGATAADesign primers
2531653AAAATAAAAACAAATAAGATACAATDesign primers
2595932GGT-TGT-GGT-CGT-TGT-GGT-GGT-TGT-GGTDesign primers
2596087TGGTACTACTGATACTACTGGTACTATDesign primers
2604948TCCACAAGTGGAGAATCCACATATGGAAAATCCACAAGTGGAAAADesign primers
2638671ACAGGCCCAACGGGAGTAACGGGTCCAACGGGAGTAACGGGTCCAACAGGAGTAACGGGTCCAACAGGAGTAACGGGTCCAACAGGAGTADesign primers
2737016GA-AA-AA-GA-AA-GA-GA-AA-TA-GA-AA-CADesign primers
2808601CAATCCCAATTATAATCCCAATCACAATTCCGATTADesign primers
2823471TCTTT-TATTT-TATTT-TATTT-TATTTDesign primers
2965111GCTTTTGCTATTTCTTTTGCTTTTGCTATTTCTTTTGCTTTCDesign primers
2965212TTCTTGCGCTTTTTCTTCTTCTTTAGCTTTTACTTCTTCTTTAGCTTTTACTTCDesign primers
2965300TCTTCTTTAACTTTTACTTCTTCTTTGACTTTTGCCTCTTCTTTAGGCTTTACTDesign primers
2965372TCTTCTTTAACTTTTACTTCTTCTTTGACTTTTGCCTCTTCTTTAGGCTTTACTDesign primers
2965444TCTTCTTTAACTTTTACTTCTTCTTTGACTTTTGCCTCTTCTTTAGGCTTTACTDesign primers
2965507GCTTTTACTTCTTCTTTA-ACTTTTACTTCTTCTTTA-ACTTTTGCCTCTTCTTTADesign primers
2994787TGATATATTTA-ATATATATTTA-ATATATATTTADesign primers
3011409CGATACATCGTCTTATGATATATCGACTTACGATACATCGTATACDesign primers
3029461GGAAATGAAAATGGAAAATGAAATDesign primers
3070277CCCTGAAACCATCCCTGTAACAATACCTGCAACCATDesign primers
3105766TCCATGTCCGCCCGGCCAACCACCATGTCCACCTGGCCAACCACCATGTCCGCCTTGCCAGCCACCATGTCCGCCTTGCCAACCACCGTGTCCGCCTTGCCAACCDesign primers
3105872CCGTGTCCACCTTGCCAACCACCGTGTCCACCTTGCGGACCACCGTGTCCGCCCGGCCAACCACCGTGTCCACCTTGCCAACCACCGTGTCCACCTTGCCAACCGDesign primers
3142294TTATATTAAATTATTTTTTATTCTADesign primers
3147783TATAATATATTAAAAAATAATTTAADesign primers
3222909TT-GT-TT-TT-GT-GT-TT-GT-TT-TT-GT-TTDesign primers
3223738TCATCTTTTGGTTTTTGTACTTCTTCCTTAGGTTTTTGTACTTCTTCCTTAGGCTTTTGTACTDesign primers
3246862AGGTACTGG-TGGTACTGG-TGGTACTGGDesign primers
3289066CCTGGTGGA-CCTGGTGGA-CCTGATGGADesign primers
3473694AAGAAAAATAAGAAAAACAACAAAAATDesign primers
3500347AATCCATATGATCCATATAATCAATATDesign primers
3642137TTTATTTCATTTTCTATTATTTTTTDesign primers
3678193CATAAACAATCAAAAATAATCACAAACATTCATAAACGTTDesign primers
3752060TTGCTCCTCTTTCTTTGGTTCTTCTTTCTTTGGTTCCTCTTTTTTDesign primers
3773969TCCCGTTGG-ACCTGTTAG-ACCTGTTGG-ACCTGTTGG-ACCTGTTGG-ACCTGTTGG-ACCTGTTGG-ACCTGTTGGDesign primers
3802374TCTTTTTGTTTTTCTTGTTTTTTTDesign primers
3807710GTT-CTT-CTT-GTT-GTT-CTT-TTT-CTT-TTT-CTT-CTT-CTTDesign primers
3910334AATCTTCAAACCTTCAAATCTTCCDesign primers
4014652TCACAACCACAATCTCAATTACAADesign primers
4057252TATTTTTTGAACATTTATTGAACATTTATTGAADesign primers
4133561GTTGTGGTA-ATTGTGGTA-ATTGTGGTADesign primers
4238880TTAAAAAAATGAATACAAAAATGATTAAAAAAGTAADesign primers
4278963ACAGCAATACCCACAGCAGTACTCACAGCAATATCADesign primers
4359967TTCTTCTTCAGCTTTTTTCTTTTCTTCCTCAGCCTTTAACTTCTCTTCTTCAGCTTTTTGCTTDesign primers
4495984TTATCTTTATCCTTATTTTTATCADesign primers
4497317TATTATATTTTAATATATAATATAADesign primers
4513710CCGGTTGCTCCCGTTGGACCCGTTGCTCCTGTTGGGCCTGTTGCTCCTGTTGAADesign primers
4513836CCTGTTATT-CCTGTTATT-CCTGTTACTDesign primers
4532281ATCTTGGTTGTCGTTTCCACCTTGGTTGTTATTTCCGCCTTGGTTGTCGTTTCCDesign primers
4532737TTCATCTGGTTTTTCTGCTTCCGGTTTTTCTACTTCTGGTTTTTCTGCTTCTGGTTTTTCTACTTCCGGTTTTTCTACTTCTGGTTTTTCTGCTTCCGGTTTTTCDesign primers
4712806GCTGCTCCTGCTGCTGCCCCTGCTDesign primers
4712917TGACCGTGT-TGACCGTGT-TGACTGTGT-TGACTGTGTDesign primers
4791669TTCTCTTTTTCTCTTCTTCACTTTDesign primers
4894175CTTCTGGTT-CTTTCGGAT-CTTTCGGTT-CTTTCGGTT-CTTTCGGTT-CTTTCGGTT-CTTTCGGTT-CTTTCGGATDesign primers
4894264GGTTCTTTC-GGTTCTTTC-GGATCTTTC-GGTTCTTTCDesign primers
4919961TAACCAATCAACCAATTCACCAATDesign primers
5096854TGCGGA-TGCGGA-TGTGGA-TGCGGA-TGTGGA-TGCAGA-TGCGGADesign primers
5159268TTTAGGTGCTTCTTTCTTAGGCTCTTCTTTTTTTGGTTCCTCTTTTTTAGGTGCTTCTTTTTTAGGCTCTTCTTTDesign primers
5163758TTCAAATTCAAGTTCTAATTCTAADesign primers
5178613ACAAGACAAACAAGATAAACAGGACAADesign primers
5267547TTCTTTTCTATACTTTTGTTTTGTTDesign primers
5321198TTC-TTC-CTC-TTC-TTC-TTC-TTC-TTCDesign primers
5353148GAGAATAGAAGAATAGGAGAATAGDesign primers
5401394TTTCT-TTTCT-TTTAT-ATTCT-TTTCCDesign primers
5451692ATTTTATTCTATATTATTTTCTTTTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.