Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Thermus thermophilus SG0.5JP17-16

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
49590	CGAGGAGGAGGAGGAGGACGAGGG	Design primers
51809	GGG-TGG-GAG-TGG-TGG-TGG-AGG-TGG	Design primers
65478	GGCGGCGATGAGGGCGCCGAAGAGGGCGGTGAAGAG	Design primers
68720	GAGGAGGACGAGGAGGGCGAAGAGGAC	Design primers
81756	GAGGTTGAGGAGGAGGGTGAGGAGGAGGGAGAGGAG	Design primers
82713	CGGCCTCGGCCAGGGCCTCGGCCA	Design primers
103329	GGAGGTGGCGGTGGAGGTGGAGGAGGAGGG	Design primers
117137	GAGGGCGAGGCCCAGGGCCAGGGC	Design primers
186170	GGGGCCAGGGCCCGGGCCGTGGCC	Design primers
186299	CGGGACCGGGCCCTGGACCTGGAC	Design primers
230198	GGG-GAG-GGG-GAC-GAG-GAG-GAG-GAG	Design primers
240513	CGT-CCT-CTT-CCT-CCT-CCT-CGT-CCT	Design primers
302698	GCCAGGGCCCGGGCCAGGGCGAGG	Design primers
307753	GAGGAGGACGAGGAGGAGGAGGGG	Design primers
317818	TGGCGGTGGCCGTGGGGGTGGCGG	Design primers
320707	GGAGGAGGGGAAGGAGGGCGAGGAGGG	Design primers
353627	GTGGCCCCGGGGCTTTTCCTCCTGGGCCTGGGCCTTTTCCTCTTGGCCCAGGGGCTTTACCGC	Design primers
392913	CAGGGCCCGGGCCATGGCCAAGGC	Design primers
414319	CCT-CCT-CTT-CCT-CAT-CCT-CTT-CCT	Design primers
422104	GTGGCCGCGGCCTTGGCCTTGGCC	Design primers
423776	CCTCGTCATCGTCCTCTTCCTGGT	Design primers
448884	GCTTCCTGGCTTCCTCGCCTCCTG	Design primers
459033	GGGGGAGGGTGAGGGCGAGGAGGA	Design primers
464310	GCCCTCGCCCTGGGCCTCGCCCTC	Design primers
553022	GGCCAGGGCCCGGGCCGGGGGCAG	Design primers
556859	GAG-GAG-GAG-GGG-CAG-GAG-GAG-GAG-CAG-GAG	Design primers
602984	CGGGACATCCGGGACCTCCGGGCCATC	Design primers
604470	AGGAGGAGGAGAAGAAGGAGGAGC	Design primers
630276	GGGCGAGGGAGAGGACGAGGGCGT	Design primers
643248	AGGCGCTCCGCGAGGCCCTCCTCGAGGCCTTCCGCG	Design primers
688484	GGGGGAGGAGGAGGGTGAGGGCGAGGGGGC	Design primers
688670	GGGGGAGGGGAAGGCGGAGGCGGA	Design primers
706756	GCCTGGGCCTCGGCCCGGGCCAGG	Design primers
714450	AGGGGACGGGAGGGAAGGGGATGGG	Design primers
741855	CAGGGCCAGGACCTGGGCCAGGGC	Design primers
778619	GGACCTGGAGGGTCCGGTCCCGGTGGGTCCGGACCCGGAGGGGCT	Design primers
780066	GAGGAAGGCGAGGAGGGCGAGGAAGGT	Design primers
787097	GGAGGAGGGGGAAGAGGAGGACGA	Design primers
805224	GCCCTGGGGGCGGCCCTGGCCGCGGCCCTGGTGGCG	Design primers
818200	AGGAGGAGAAGGAGAAGGAGGAAGAGGAAG	Design primers
829810	CCGAGGCCCAGGCCGAAGCCCAGG	Design primers
855397	AGGGGG-AGGGGG-AGGTGG-AGGTGG-CGGGGG	Design primers
861717	GGGGAGGGGGCGGGGGCGGAGGAGGGTGAGGGGGAG	Design primers
864295	GGGGGAGGGGAGGGGGAGGGGGGTG	Design primers
955487	TCCCGGGCCCGGGCCCGGTCCGGG	Design primers
997943	GGAGGAGGACGAGGTGGAGGTGGA	Design primers
1007763	CCTCGGCCTGGGCCTTGGCCGCGGCCGCGG	Design primers
1023754	GGAGGCGGAGGAGGGGGCGGAGGAGGTGGC	Design primers
1027466	GGGAGGGGAAGGGCGAGGGGGAGG	Design primers
1040060	CCT-CCT-CCT-TCT-CCT-CCT-CCT-CCT	Design primers
1049672	GCCTTGGCCGTGGCCCTGGCCTTC	Design primers
1078067	AGGTCCAGGACCTGGTCCAGGTGC	Design primers
1079650	CTCCTCCACCTCCTGCTCCCCCTCCTCCCC	Design primers
1112839	CCGTGG-CCGTGG-CCGAGG-CCCTGG	Design primers
1113386	CCGGGCCCGGGACCTGGCCCAGGC	Design primers
1149316	GGGGGCGGGGCGGGGCGGGGGGCGGGAGGG	Design primers
1150886	CCCCACCTCCACCCCCTCCCCCAG	Design primers
1160897	AGGCCCTGGCCCAGGCCCTGGCCC	Design primers
1187423	TAGCTTTCACA-CCGCTTTCACA-CCGCTTTCACA	Design primers
1201835	GAGACCAGGGTGGAGACCAGGGCCACGACCAGGGTG	Design primers
1202575	AGG-AGG-AGA-AGG-AGG-AGA-AGC-AGG	Design primers
1221892	GGCCCT-GGCCCT-CGCCCT-GGCCTT-GGCCCA	Design primers
1242277	TGGCCTCGGCCTTGGCCTCGGCCT	Design primers
1244851	AGGCCT-TGGCCT-TGGCCT-CGGCCT	Design primers
1299831	TCCTCA-TCCTCA-TCTTCA-TCCTCC	Design primers
1310597	GGCCAGGGCCCGGGCCAGGGCCAC	Design primers
1328970	CCTCGCCATCGCCCACGCCATCGC	Design primers
1339247	GGCCTCGGCCTTGCCCTCGCCCTC	Design primers
1354543	ACGCCCTCCTCGCCCTCCAGGCCCTCC	Design primers
1375313	GGCCAA-GGCGAA-GGCCAA-GGCCAG-GGCAAA	Design primers
1378510	TGGCCC-TGGCCC-GGGCCC-TCGCCC	Design primers
1488140	ACCGCCTCCGCCTCCGCCACCCCC	Design primers
1494554	CCGAGGCCCAGGCCGAGGCCCAGG	Design primers
1554198	TGGGCCTGGGCATGGCCCTGGCCC	Design primers
1586573	CCCCTGCCCCAGGCCCTGCGCCTG	Design primers
1589717	CGGAGGGCCTCCCGGATGGCCTGCCTGAGGGCCCCC	Design primers
1591990	CCTCCACCTCCCCCGCCACCTCCC	Design primers
1642901	ACCCCC-TCCCCC-TCCCCC-GCCCCC	Design primers
1697123	CCCGGTCCCGCTCCAGGTCCCGGG	Design primers
1719329	GAGGGCGAGGACCAGGGCCAGGGC	Design primers
1727243	CTCCCCCTCCTCCTCCGCCTCCAC	Design primers
1734190	CCCGCCTCGCCCCGGGCCGCGCCGC	Design primers
1742728	TGGCCCTGGGCCTCGCCCTGGCCCAGGCCC	Design primers
1750706	CTGGCCCGGGCCCTGGCCCTGGAC	Design primers
1756539	CCCCCCACCCCCCTCGCCCCCCCCG	Design primers
1791130	CGGCTCCGCTCGGTTCGGCTCGGCC	Design primers
1858062	TCC-TCC-TCC-CCC-TCC-TCC-TCC-ACC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

49590

CGAGGAGGAGGAGGAGGACGAGGG