Microsatellites /Tandem Repeats database

Genome: Clostridium botulinum F str. 230613

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
2913ATATAAAATTATTTAAAATTATTTAAAATTDesign primers
108466GAAAAGCCTAATGAGAAGGCTAACGAGAAGCCTAATGAGAAAGCTAACGAAAAGCCTAATGAGAAGGCTAACGAAAAGCCTAATGAGAAGGCTAACDesign primers
439698ACAGAGTATAGAGTACAGAGTAAAGAGTACAGAGTAAAGAGTDesign primers
459388CCAGAACCAAAGCCAGATAAGCCGGAACCAAAACCAGATAAGCCAGAACCAAAACCAGATAAGDesign primers
598153TTTAGA-ACTAGA-ACTAGA-ACTAGA-ACTAGA-ACTAGA-ACTAGA-ACTAGA-ACTAGA-ACTAGA-ACTAGA-ACTAGADesign primers
603502TCTTTTCTTTGAGCTTCTTCAGCTTCTTTTCTTTGAGCCTCTTCAGCCGCTTTTCTTTGGGCTTCTTCAGCTTCTTTTCTTTGAGCCTCTTCAGCCGCTTTTCTTTGGGCTTCTTCAGCTDesign primers
1235016AA-AA-AA-TG-AA-AA-AA-AA-TA-AA-AA-AA-AA-TA-AADesign primers
1250485ATAAAAAGTAAATAG-ATTAAAAGTAAATAG-ATTAAAAGTAAATAG-ATTAAAAGTAAATAG-ATTAAAAGTAAATAG-ATTAAAAGTAAATAG-ATTAAAAGTAAATAGDesign primers
1494248CCAATGAAAGAAAATCCAATGAAGGAAAATCCAAAGAAAGAAAATDesign primers
1659006ATAAGTA-ATAAGTA-ATAAGTA-ATAAGTADesign primers
2304743TAAGTTATATATTTTCTA-TAAGTTATATATTTTCTA-TAAGTTATATATTTTCCADesign primers
2476147ACATCTTCTTCTGCATCTTCTTTCACATTCTCTTCTGCATCTTCTTTCACATTCTCTTCTGCATCTTCTTTCDesign primers
2476333TCTTTCGCACTC-TCTTTCGCACTC-TCTTTCACACTCDesign primers
2687541CCTGGATCTGTTCCTGGATCCTTACCTGTATCTGTTCCTGGATCCTTGCCTGTATCTGTTCCTGGGTCCTTADesign primers
2986822TTATTTAGATA-TTATTTAGATA-TTATTTAAATADesign primers
3049838AAAAATTATTAAATAGGAATAAAGATTATTAAATAGGAACAAAAAATATTAGATAGGAATDesign primers
3154054CACCTG-CACCTG-CACCTG-CACCTGDesign primers
3488858CCTAATTATAAGTATTGCATACAC-TCTAATTATAAGTATTGCATACAC-TCTAATTATAAGTATTACATACACDesign primers
3525177ATTATTATTCATATTATTATTCACATTGTTATTCATDesign primers
3821552ATAAATACAA-TTAAATACAA-TTAAATACAADesign primers

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