Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Clostridium botulinum F str. 230613

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
2912	CATATAAAATTATTTAAAATTATTTAAAAT	Design primers
8789	AAATTTTAAATGAAGAGAACTTAAATGAAGAGAACTTAAATGAAG	Design primers
88477	AAGAAA-TAGAAA-AAGAAA-AGGAAA	Design primers
95994	TAATATAATAATTTAATAATATAA	Design primers
96038	CAAATATATCATATATATTAAATATAT	Design primers
108462	TATAGAAAAGCCTAATGAGAAGGCTAACGAGAAGCCTAATGAGAAAGCTAACGAAAAGCCTAATGAGAAGGCTAACGAAAAGCCTAATGAGAAGGC	Design primers
133691	CATGAACATGAACACAGCCATGAATGTGAACATAGCCATGAACACGAACACAAC	Design primers
133769	CATGATCATGAACATAATCATGCTCATGAT	Design primers
206697	TTTTTGTTTTGTTTTTTTGTCTTTT	Design primers
211217	AAAATATTTTAAAATAGCTTTAAATATATT	Design primers
234456	TTATTATAATTATTATTTTTATTA	Design primers
287780	ATATTATAATTTTATAAGATTATA	Design primers
300399	AGAAAATAGAAGACAATAGCAGAAAAAATA	Design primers
353415	TATCACATAATTTTCACACAATAATTACATAAT	Design primers
380665	TA-TT-TT-TA-TG-TT-TA-TT-TA-TA-TT-TT	Design primers
401329	TAGAAAAATATATAATAATATTAAAAAATA	Design primers
419303	CTTTTCCTTATCCTTTTTATTTTC	Design primers
427570	AGAGTACTGAGTACAGATTACAGAGTAT	Design primers
431013	GTATTTATATTTGGATTTTTATTT	Design primers
439696	GGACAGAGTATAGAGTACAGAGTAAAGAGTACAGAGTAAAGA	Design primers
439739	TACAGAG-TACAAAG-TACAAAG-TACAGAG	Design primers
458336	TTCTTTATAGATATTTATAGTTAATTATAG	Design primers
459383	AAAAACCAGAACCAAAGCCAGATAAGCCGGAACCAAAACCAGATAAGCCAGAACCAAAACCAGATAAGCCGGAACCAAAACCAG	Design primers
469564	ATAAAATATAATAATATAAAATATA	Design primers
470100	AATATTAA-AATATTAA-AAAATTAA	Design primers
472039	TGCATTCCCGTTTGCTGCATTCTTGTTTGCTGTATTCTCTTTTGC	Design primers
519298	AATAATAATGATAATAAATATAAT	Design primers
553407	ATTAGAAGAAATTATAAAAAATGAGAAAAA	Design primers
555453	GTTAAAGAATAATTAAAGAATAATTAAAAAATAGTTAAAAAACA	Design primers
565479	GGAGGCTTTGGAGGTTTTGGCGGCTTT	Design primers
575880	AA-AA-GC-AA-AG-AA-AA-TA-AA-GG-AA-AA-TA-AA-AA	Design primers
598150	ATCTTT-AGAACT-AGAACT-AGAACT-AGAACT-AGAACT-AGAACT-AGAACT-AGAACT-AGAACT-AGAACT-AGAACT	Design primers
603504	TTTTCTTTGAGCTTCTTCAGCTTCTTTTCTTTGAGCCTCTTCAGCCGCTTTTCTTTGGGCTTCTTCAGCTTCTTTTCTTTGAGCCTCTTCAGCCGCTTTTCTTTGGGCTTCTTCAGCTTC	Design primers
603660	GATTCTTCAGCTTCTTTTCTTTGAGTTTCTTCAGCCGCTTTCCTTTGAGTTTTTTCAGCTTCTTTTCTTTGAGCCTCTTCAGCTGCTTTTCTTTGGGTTTCTTCAGCTGCTTTTCTTTGA	Design primers
603866	TTTTTCTCTTTCTTGTTCTTTTTC	Design primers
632606	AAAAAATATTAAAAAGGAAAATAATAAAAAAGAAAATAATAAAAA	Design primers
632892	ATAATAATACATAATGATGCATAATAATAA	Design primers
694506	AGATAAATATAAAGTTAAAGATAAAGAAAA	Design primers
720067	AAATACTATAAATATTATAAATATTAT	Design primers
720106	ATTTATAGTTATATTTATATTTTTATTTTT	Design primers
725248	TTTCAAAAAGTTTCGGAAAGTTTCAAAAAG	Design primers
745086	TAAAAAAGCATTAAAAAGAATAAAAAAAGA	Design primers
781111	AAAAATGATAAAAAATTTTAAAAAAGGATC	Design primers
859306	AAAGAAAAAAAGAAGAAAATAAAA	Design primers
905922	AATAATAGTAATAATACTAATAAA	Design primers
950719	AAAGATAAGGATAAAGAAAAAGATAAGGATAAGGAT	Design primers
1030537	ATCATCATAATCATCATTATCATTATCATA	Design primers
1235012	TT-AT-AA-AA-AA-TG-AA-AA-AA-AA-TA-AA-AA-AA-AA	Design primers
1236751	AAAAATAAAGAGAAATAAAGAAAAAAAGAG	Design primers
1250483	TCATAAAAAGTAAAT-AGATTAAAAGTAAAT-AGATTAAAAGTAAAT-AGATTAAAAGTAAAT-AGATTAAAAGTAAAT-AGATTAAAAGTAAAT-AGATTAAAAGTAAAT	Design primers
1266997	ATATTATATGAAATTATAATATATT	Design primers
1318022	AATATTTAAAAATTTTTAAACATAATTAAA	Design primers
1334484	AAAGATAAAGCTAAATATAGAGAT	Design primers
1391052	AATTTTAAATTTAATTTCAATATT	Design primers
1404858	ATAATTAATAAAAATTATTAATAAAAAATA	Design primers
1417337	AATTT-AATTT-AAATT-AATAT-AAATT	Design primers
1428088	CTTGTTGATGTTGCCTGAGAAGCA-GCTGTTGATGTTGCCTGAGGGGCA-TTTGTTGATGTTGCCTGAGGGGCA-TTTGTTGATGTTGCTTGAGAGGCA	Design primers
1461151	TT-TT-AT-TG-TT-AT-TT-TT-AT-TT-TT-TT	Design primers
1461253	AA-AT-AT-AT-AT-AA-AT-AA-AG-AT-AT-AT-AT-AC-AT	Design primers
1477521	TT-TT-TT-AT-TT-TT-TT-AT-AT-AT-TT-TT-AT-AT-GT	Design primers
1483902	ATATAATAAAATATTATAACATATAATTTA	Design primers
1494243	AAATGCCAATGAAAGAAAATCCAATGAAGGAAAATCCAAAGAAAG	Design primers
1494431	GGTATGATGGGAATGGATGATATGATGGGAATGTCTCCTATGATGGGCATGGATGATATGATGGGAATGTCT	Design primers
1494583	GCATATGAAGCACATGAAGCATATGAA	Design primers
1531934	GAATAAGAAGAAGAGTAAGAATAG	Design primers
1577877	TTTATT-TTTATT-TCTATT-TTTTTT	Design primers
1612230	CATATCTCTCATTATCTCTCCATATCTATC	Design primers
1613588	CAGCTGAAACTGCTGAAACTGCTGAAA	Design primers
1615490	CAGCTGAAACTGCTGAAACTGCTGAAA	Design primers
1626854	TTAATAGTGGTTTAAAGTGGTTGAAAGTGG	Design primers
1636766	AAAAAAAAAGAGAAAAAGAATAAAAAAAAT	Design primers
1643726	AAAGTAAAGGTAAAAGTAGAAGTA	Design primers
1649574	AACATAAAATAACAGAAGATAAAAT	Design primers
1659004	TTATAAG-TAATAAG-TAATAAG-TAATAAG	Design primers
1722696	CAGCTA-CAGCTA-AAGCTA-CAGCAA	Design primers
1740327	TAGTAAAAAAGATAGTAAAAAGGATAATAAAAATGA	Design primers
1802418	TTATAAGTTTTTTTAAGTATTTATAATTTT	Design primers
1816204	AAAGGATGCAAATGGATGGAAAAAGATGTA	Design primers
1823129	AATTTGATAATGTGATAATTTCAT	Design primers
1842853	AAAATAAAAAAATATAATATAAAAT	Design primers
1885215	TTCTATATCCTCTATATCTTCTATAGC	Design primers
1893243	TACTTCTATTACTTCTTTTACTTTTAT	Design primers
1910639	TTATTTTAAAATTATTCTAATAGTGTTTTAAAA	Design primers
1927025	ATTTTTTTAAAATTTTTTTAATTTTTTATA	Design primers
1949789	TTTTTTTTATATTTTTTTTCTTTTCCTTTT	Design primers
1958283	AATTATTATTATAATGATAATTTT	Design primers
2036965	TTTCAT-TTTCAT-TCTCAT-TTTCAG	Design primers
2052286	ATATATAAATATAGAAACATATAA	Design primers
2078673	ATCATCATCCTCATCTTCATCATA	Design primers
2081398	AA-TT-TT-TA-AT-AT-TT-AT-TT-TT-TT-AT-TT-TT	Design primers
2096020	AAATTAAATAAATTTAATTTAAATA	Design primers
2108078	ATTGTTTTTTATTCTTTATTATTCTTTCTT	Design primers
2117388	AATATAACATAGTATAAAATAATTT	Design primers
2117953	TTAAATAAAATTAATTGAAATTATA	Design primers
2131596	AAATTATAAAAAAATACAAAATATTATATA	Design primers
2219461	ATTTTATATTATTTCTTTTTATTTT	Design primers
2223488	AATTTAAATTTTAATGTAAATTCA	Design primers
2226729	TAAAAAATAAAAAAATTTAAAAAT	Design primers
2256320	TAATTTATTTTACTTTGATTAAATT	Design primers
2304740	GACTAAGTTATATATTTT-CTATAAGTTATATATTTT-CTATAAGTTATATATTTT	Design primers
2323241	TTGACCCTGGTTTTTCTG-TTGACCCTGGTTTTTCTG-CTGACCCCGGTTTGTCTG-CTGGCCCTGGTTTGTCTG-CTGATCCTGGTTTGTCTG-TTGATCCTGGTTTGTCTG-TTGACCCTGGTTTATCTG-TTGACCCTGGTTTGTCAG	Design primers
2326023	TTTTAAATTTTTAACTTATTAAAT	Design primers
2397904	CTCTTCTTTTCTCATTTCTTCTATT	Design primers
2406971	TCATATTATTTCATATATTTTCTTATTAGT	Design primers
2433495	ATTCTTTTTTCTTCATTTTTATTCTCCTTT	Design primers
2476145	CGACATCTTCTTCTGCATCTTCTTTCACATTCTCTTCTGCATCTTCTTTCACATTCTCTTCTGCATCTTCTT	Design primers
2476277	TCGCGATCTCTTTCGCACTCTCTTTCGCACTCTCTT	Design primers
2476332	TTCTTTCGCACT-CTCTTTCGCACT-CTCTTTCACACT	Design primers
2489714	TATTATTATAATAATTATTAATAT	Design primers
2519815	TCATT-TCATT-TCTTT-CCATT-TGATT	Design primers
2549475	TCATTCTCTTCATCCTCTTCATCCTCT	Design primers
2569583	TTTTCTTTAATTTACTTTAATTTACTTCAA	Design primers
2633054	TTTATTTATATTTTTATTTTCATT	Design primers
2643633	TAGATTTTTTCATATTTTTTGATATTTTTT	Design primers
2651753	TATTAAAATTAATGTTAACATTAA	Design primers
2687545	GATCTGTTCCTGGATCCTTACCTGTATCTGTTCCTGGATCCTTGCCTGTATCTGTTCCTGGGTCCTTACCTGTGTCTGTTCCTGGATTCTTACCTGTGTCTGTTCCTGGATCCTTACCTG	Design primers
2688451	TTTCATCTTCTTCATCTTCATACTCATCCTCTTCATATTCATCATCATCTTCTTCATACTCAT	Design primers
2772196	AAATT-AAAAT-AAAAA-ATAAA-AATA	Design primers
2796155	TAAAATATAAAGTAAAAAATATAAAAGA	Design primers
2815048	TTCTAAAATCTTATAAAGTCATCTAAAATA	Design primers
2825999	TTTTGCTTTATTTGCTTTTTTTACTTT	Design primers
2841003	TAAATTTATATTTAAAATTAAATA	Design primers
2866977	TTTTTTAATCTTTTCTCATCTCTTTTAAAC	Design primers
2892807	TT-TT-AT-AT-TT-TT-AT-TT-TT-TT-CT-AT	Design primers
2905574	TTTTTTCTTTTTTTACTTTTTCTTT	Design primers
2919392	TGTGATCTTTTGAGAACTTTTGAGGTCTTT	Design primers
2928137	AATTTATTACAATTTGTTTCAATTATTTAC	Design primers
2952604	TTTGTT-TTTATT-TTTATT-TTTCTT	Design primers
2958080	TATTATTAATATAATTATTAGTAT	Design primers
2974897	ATAATAATACTATTAATAATTATA	Design primers
2986821	TTTATTTAGAT-ATTATTTAGAT-ATTATTTAAAT	Design primers
2989652	AAAATTAAAGTTAAAAATAAAAGT	Design primers
3017343	TTTTCTTTTGCTTTTTCATATTCT	Design primers
3049833	GTAATAAAAATTATTAAATAGGAATAAAGATTATTAAATAGGAACAAAAAATATTAGATA	Design primers
3080672	TAAAAATTAATAAAATTTTATAGAATTTAA	Design primers
3125726	CT-AT-AT-TT-AT-AT-AT-AT-AT-TT-AT-AT	Design primers
3131428	ATTTTCTATAATTTTAGATAATTTTTTATC	Design primers
3154050	CCTACA-CCTGCA-CCTGCA-CCTGCA-CCTGCA	Design primers
3159916	TTTTCATATATTTCATATTTTTCAAAT	Design primers
3208063	TTTAGTTAAAT-TTTAGTTAAAT-TTTAATGAAAT	Design primers
3208740	AGAGTACAGAGTATAAAGTACAGAGAAC	Design primers
3230773	TTTCTTAATTTTTTATTTATTTTTTCTTTATTC	Design primers
3240153	AAAGCTAAAGCCAAAACTAATGCT	Design primers
3246093	TTATA-TTTTA-TTATA-TTATT-TTTTA	Design primers
3261254	GTAGGTATAGTAGGTGTAGTAGGTGTA	Design primers
3310560	ATAAAAATAAGAATAAAGATAAGA	Design primers
3310603	TAA-TAA-TAA-CAA-CAA-TAA-TAA-CAA	Design primers
3451368	TTAATTTTTTCTTTAATTTTTCTTGATTTTTTC	Design primers
3459025	TCTTTCTTTTTCTCTAACTCTGTATCTTTCTCTATATCTAACTCTATATCTATCTCTTTCTCTAACTCTATC	Design primers
3465721	TTAGTTCCTTTAAAGTTCCTTTTTAATTCTTTT	Design primers
3472281	AATATAAAAATAAATATTAATCTA	Design primers
3488853	TACCTCCTAATTATAAGTATTGCATACACTCTAATTATAAGTATTGCATACACTCTAATTATAAGTATTACA	Design primers
3489348	TTG-TTA-TTA-TTA-TTC-TTA-TTT-TTA	Design primers
3525163	AAATTTTTATTC-ATATTATTATTC-ATATTATTATTC-ACATTGTTATTC	Design primers
3528907	TAAATCAAAATCTAATTCTAAATA	Design primers
3537181	CATTTT-TATTTT-CATTTT-CTTTTT	Design primers
3556775	TA-CA-TT-TT-TT-TA-TT-TT-TT-TT-TA-TG-TT-TT-TT	Design primers
3582435	AAGACATTTCAAGATATTGCAAGATATTGC	Design primers
3616863	TTTTCTTTTATTTTATCTTCGTTTC	Design primers
3641711	TTAAAGGTATTGAAAAGTATTTAAAAGAAT	Design primers
3679863	AAAAAAAAATATAAAATAAAGAAAA	Design primers
3743866	TTTTAATATATTGTAATTTATTTTAAAATC	Design primers
3772109	TAACTTTAAATTTAACTTTAAATT	Design primers
3778131	TTTCTTGTTTTTTTGTCTCTGTTTTTTTTGCTTCTTCTTTTTTAG	Design primers
3788933	TTATTTTTATCTTTATTTTTAATT	Design primers
3817841	TCT-TCT-TTT-TCT-TCT-TCT-TTT-TCT	Design primers
3821549	CATATAAATACAATTAAATACAATTAAATA	Design primers
3876393	TAACTTTAACCTTTACTTTATCTT	Design primers
3880955	CTC-CTG-CAG-CTG-CTC-CTA-TAG-CTG-CTC-CTC-CTG-CTG	Design primers
3888630	TTCATTTTTATTTTCTTTTTCATT	Design primers
3902113	TCTCCTTGACCTCCTTGATCTCCTTGA	Design primers
3902609	TTATTTTATCTTTTTTTAATTTCTT	Design primers
3938400	TATATATATCTATATATTTATATT	Design primers
3972297	AATTTTAACTTTAAATTTAATTTC	Design primers
3980005	TAATATTAAATATTATTAACAAATATTTAA	Design primers
3985544	GGTATT-GTTATT-GTTATT-TGTATT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

2912

CATATAAAATTATTTAAAATTATTTAAAAT