This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 24205 | TTATTATTG-TTATTATTG-TTATTATTG | Design primers |
| 75495 | GGCATGTATGGAATG-GGCATGTATGGAATG-GGCATGTATGGAATG-GGCATGTATGGAATG | Design primers |
| 158173 | TGCGATTGGGGATTT-TGCGATTGGGGATTT-TGCGATTGGGGATTT-TGCGATTGGGGATTT-TGCGATTGGGGATTT-TGCGATTGGGGATTT-TGCGATTGGGGATTT-TGCGATTGGGGATTT-TGCGATTGGGGATTT | Design primers |
| 307034 | GATGGAGGC-GATGGAGGC-GATGGAGGC | Design primers |
| 372191 | TATCACACCACTTCTA-TATCACACCACTTCTA-TATCACACCACTTCTA-TATCACACCACTTCTA-TATCACACCACTTCTA-TATCACACCACTTCTA-TATCACACCACTTCTA | Design primers |
| 514980 | TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC-TTTGGATGAATC | Design primers |
| 614282 | AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG-AAAATACGATGAACTCACAGG | Design primers |
| 617817 | TTCATTGGGG-TTCATTGGGG-TTCATTGGGG-TTCATTGGGG-TTCATTGGGG-TTCATTGGGG-TTCATTGGGG-TTCATTGGGG | Design primers |
| 645934 | CTCAAATCATCATAACTAACC-CTCAAATCATCATAACTAACC-CTCAAATCATCATAACTAACC-CTCAAATCATCATAACTAACC | Design primers |
| 720717 | TTCTTTTTCTTTAGT-TTCTTTTTCTTTAGT-TTCTTTTTCTTTAGT-TTCTTTTTCTTTAGT-TTCTTTTTCTTTAGT-TTCTTTTTCTTTAGT-TTCTTTTTCTTTAGT | Design primers |
| 794754 | TTTAATTCTGTG-TTTAATTCTGTG-TTTAATTCTGTG | Design primers |
| 852105 | TTTAATTCTGTG-TTTAATTCTGTG-TTTAATTCTGTG-TTTAATTCTGTG-TTTAATTCTGTG | Design primers |
| 899545 | AAAAAAAAGAAGGTTTA-AAAAAAAAGAAGGTTTA-AAAAAAAAGAAGGTTTA-AAAAAAAAGAAGGTTTA | Design primers |
| 899614 | AAAAAAGAAGGTTTAA-AAAAAAGAAGGTTTAA-AAAAAAGAAGGTTTAA-AAAAAAGAAGGTTTAA-AAAAAAGAAGGTTTAA | Design primers |
| 911044 | GATCAAAAACCCCTT-GATCAAAAACCCCTT-GATCAAAAACCCCTT | Design primers |
| 911090 | ATCAAAAACTCTCTG-ATCAAAAACTCTCTG-ATCAAAAACTCTCTG | Design primers |
| 1012440 | TTATTCTCT-TTATTCTCT-TTATTCTCT-TTATTCTCT-TTATTCTCT-TTATTCTCT-TTATTCTCT-TTATTCTCT-TTATTCTCT-TTATTCTCT-TTATTCTCT | Design primers |
| 1020718 | GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA-GAATAAA | Design primers |
| 1025060 | TAAGATAAAACGCATCA-TAAGATAAAACGCATCA-TAAGATAAAACGCATCA-TAAGATAAAACGCATCA | Design primers |
| 1025129 | AAGATAAA-AAGATAAA-AAGATAAA-AAGATAAA-AAGATAAA-AAGATAAA-AAGATAAA-AAGATAAA-AAGATAAA | Design primers |
| 1025277 | CATCCAAT-CATCCAAT-CATCCAAT-CATCCAAT-CATCCAAT-CATCCAAT | Design primers |
| 1077548 | TAACCCTCAAATCATCATAAC-TAACCCTCAAATCATCATAAC-TAACCCTCAAATCATCATAAC-TAACCCTCAAATCATCATAAC-TAACCCTCAAATCATCATAAC-TAACCCTCAAATCATCATAAC | Design primers |
| 1316144 | TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA | Design primers |
| 1380504 | AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA-AGAATAA | Design primers |
| 1384993 | TAAGATAAAACGCATCA-TAAGATAAAACGCATCA-TAAGATAAAACGCATCA | Design primers |
| 1385057 | ATAAAAAG-ATAAAAAG-ATAAAAAG-ATAAAAAG-ATAAAAAG-ATAAAAAG-ATAAAAAG-ATAAAAAG-ATAAAAAG-ATAAAAAG | Design primers |
| 1385204 | AATCATCC-AATCATCC-AATCATCC-AATCATCC | Design primers |
| 1501202 | GCCGAACTTGAGCAGTGTCGGCTC-GCCGAACTTGAGCAGTGTCGGCTC-GCCGAACTTGAGCAGTGTCGGCTC | Design primers |
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