This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
Position | Sequence | |
165137 | AAATCTTTCTGTTCTTTAACC-AAATCTTTCTGTTCTTTAACC-AAATCTTTCTGTTCTTTAACC | Design primers |
165279 | TTTGTTTTTCTTGTTCTGTCT-TTTGTTTTTCTTGTTCTGTCT-TTTGTTTTTCTTGTTCTGTCT-TTTGTTTTTCTTGTTCTGTCT | Design primers |
209738 | TTTCTTCTGTGA-TTTCTTCTGTGA-TTTCTTCTGTGA-TTTCTTCTGTGA-TTTCTTCTGTGA | Design primers |
272916 | GTTTGGTTG-GTTTGGTTG-GTTTGGTTG | Design primers |
369799 | TTCTTTAACCTCTTCTTTTTCTTC-TTCTTTAACCTCTTCTTTTTCTTC-TTCTTTAACCTCTTCTTTTTCTTC-TTCTTTAACCTCTTCTTTTTCTTC | Design primers |
421120 | TATCACACCACTTCTG-TATCACACCACTTCTG-TATCACACCACTTCTG-TATCACACCACTTCTG | Design primers |
469975 | TTTTATCACA-TTTTATCACA-TTTTATCACA | Design primers |
541759 | CACAGAATTAAA-CACAGAATTAAA-CACAGAATTAAA | Design primers |
579052 | TTTAAGATAAT-TTTAAGATAAT-TTTAAGATAAT-TTTAAGATAAT-TTTAAGATAAT | Design primers |
618059 | CTAAAAAAGAAATTC-CTAAAAAAGAAATTC-CTAAAAAAGAAATTC-CTAAAAAAGAAATTC-CTAAAAAAGAAATTC-CTAAAAAAGAAATTC-CTAAAAAAGAAATTC-CTAAAAAAGAAATTC | Design primers |
710807 | AAATATCTCAATAAT-AAATATCTCAATAAT-AAATATCTCAATAAT-AAATATCTCAATAAT-AAATATCTCAATAAT-AAATATCTCAATAAT-AAATATCTCAATAAT-AAATATCTCAATAAT-AAATATCTCAATAAT-AAATATCTCAATAAT | Design primers |
772445 | CCCCAATGAACC-CCCCAATGAACC-CCCCAATGAACC | Design primers |
775916 | TCGTATTTTCTTGTGAGATCA-TCGTATTTTCTTGTGAGATCA-TCGTATTTTCTTGTGAGATCA-TCGTATTTTCTTGTGAGATCA-TCGTATTTTCTTGTGAGATCA-TCGTATTTTCTTGTGAGATCA | Design primers |
795020 | TCATTTTAAATCCTT-TCATTTTAAATCCTT-TCATTTTAAATCCTT-TCATTTTAAATCCTT-TCATTTTAAATCCTT | Design primers |
937750 | AAAAAAAAGAGTTTTAAAAAAAAGAGTTTTAAAAAAAAGAGTTTT | Design primers |
937796 | AAAAGAAAGAGTTTTAAAAAGAAAGAGTTTTAAAAAGAAAGAGTTTTA | Design primers |
1039236 | CAATCATTCAATCATC-CAATCATTCAATCATC-CAATCATTCAATCATC | Design primers |
1039291 | TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA | Design primers |
1091729 | ATCATAATTAACCCTCAAATC-ATCATAATTAACCCTCAAATC-ATCATAATTAACCCTCAAATC-ATCATAATTAACCCTCAAATC | Design primers |
1211485 | AAATCTTTCTGTTCTTTAACC-AAATCTTTCTGTTCTTTAACC-AAATCTTTCTGTTCTTTAACC | Design primers |
1211627 | TTTGTTTTTCTTGTTCTGTCT-TTTGTTTTTCTTGTTCTGTCT-TTTGTTTTTCTTGTTCTGTCT | Design primers |
1239257 | CATTTATTTGG-CATTTATTTGG-CATTTATTTGG | Design primers |
1274031 | AAGATTAAAT-AAGATTAAAT-AAGATTAAAT-AAGATTAAAT-AAGATTAAAT-AAGATTAAAT-AAGATTAAAT-AAGATTAAAT-AAGATTAAAT-AAGATTAAAT-AAGATTAAAT | Design primers |
1285133 | AAAGAGAAT-AAAGAGAAT-AAAGAGAAT-AAAGAGAAT-AAAGAGAAT-AAAGAGAAT | Design primers |
1353583 | AAACCC-AAACCC-AAACCC-AAACCC | Design primers |
1379764 | AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA-AAGAATAA | Design primers |
1383897 | CAATCATTCAATCATC-CAATCATTCAATCATC-CAATCATTCAATCATC | Design primers |
1383952 | TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA-TCAAGTAA | Design primers |
1406794 | TGTTTTCAT-TGTTTTCAT-TGTTTTCAT-TGTTTTCAT | Design primers |
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