Microsatellites /Tandem Repeats database

Genome: Haemophilus influenzae R2846

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
31578CACT-TATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATCDesign primers
37231CATTCCGCCCATTCCACCCATTCCACCCATACCGCCDesign primers
54498TATCTGAGCCTAAATTTGAGCCTAAATTTGAGCCTADesign primers
76093AAAAATGACAAATGAAAAATTGAAAATGDesign primers
92923ATTTTGAAAATTTTTAAAAAATTTTGAACTDesign primers
123176ATTTTACTTTTAATTTTTATTTTADesign primers
186512TTTC-AGCA-AGCA-AGCA-AGCA-AGCA-AGCA-AGCA-AGCA-AGCA-AGCA-AGCA-AGCA-AGCA-AGCADesign primers
196207TAAAACGTCAGCAAGAACAGCAACGTCAGCAAGAACAGCAACGTCAGCAAGAACAGCAACGTCAGCAAGAACAACAACGTCAGCAAGAAADesign primers
220743ACAA-TATG-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
225062TAGGCTAAAAA-TAATCTAAAAA-TAATCTAAAAA-TAATCTAAAAADesign primers
317947TCAT-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACADesign primers
357569AGCACGACCAGAACGACCAGCACGACCDesign primers
414552GTATTAT-TAATTCA-TAATTCA-TAATTCA-TAATTCA-TAATTCA-TAATTCA-TAATTCA-TAATTCADesign primers
420580TATAAGCTCGCT-GGTAAGCTCGCT-GGTAAGCTCGCTDesign primers
515834ATGCTCGTGTTTATGATCGTGGTCGTGTTTATGGTCATGGTCATGTTTATGATCDesign primers
523434TTTTAA-GTTTAA-ATTTAA-ATTTAADesign primers
581127GCAAATATTGGTGTAACTCTG-TAGGATATTGGTGTAACTCTG-TAGGATATTGGTGTAACTCTGDesign primers
666160TTTTAA-GTTTAA-ATTTAA-ATTTAADesign primers
694543TGTTGGTGATGGTGTTGCTGTTCGDesign primers
731231TAGCATTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGC-TTGGTTTGCDesign primers
737972TCATGTG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATG-AAAGATGDesign primers
774521TCATTATT-TGATTATT-TGATTATT-TGATTATTDesign primers
788676GCTGATGCTGAATCTGATGCTGATGCTGCTDesign primers
796770TTTTGGTGATATGTTCGGTGATATTTTTGGCGATATDesign primers
872172GAAATGTAAAGATTTGTAAAGAAATGTAAADesign primers
928884GATG-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACCDesign primers
942009TCTT-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGAC-AGACDesign primers
984861AGCA-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
1059257GCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
1122086GGTATAA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCA-TCTTTCADesign primers
1247739ACAAT-GAAAT-GAAAT-GAAAT-GAAAT-GAAAT-GAAAT-GAAATDesign primers
1385619AACAACCGATGCAAAAACCAATGCAACAGCCAATGCDesign primers
1385669CAGCCAATACAACAACCGATACAACAGCCAATACAADesign primers
1385920AAAGAAGAAGAAAAAGACAAAGAAAAAAAADesign primers
1386983AATGAAATTGAATATGAAAATGTADesign primers
1397560AGAGACTTCTACTGAAGAAACAACAGTAACTTCTACTGACAAAACAACAGTAACTTCTACTGACAAAACAACDesign primers
1466181TAACTTGCCAA-ATAATTCCCAA-ATAATTCCCAA-ATAATTCCCAA-ATAATTCCCAA-ATAATTCCCAA-ATAATTCCCAA-ATAATTCCCAADesign primers
1495909TATTCTTTTTCTTATTTTTTTTCTTATTATDesign primers
1505814TGAC-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACT-GACTDesign primers
1633696ACTC-TTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTGDesign primers
1678065AAATAAACTAAAACAAAATTAAATTDesign primers
1690001GCTG-CCCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCADesign primers
1729097AAGAAAATAAAAAAATAAGAAAGTDesign primers
1751414GCAG-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACCDesign primers
1776808GCTGCTGCTACTGCTGCCGCTGCTDesign primers
1809641GCAG-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACC-AACCDesign primers

Please help us improve this resource by reporting problems, suggestions etc.