Microsatellites /Tandem Repeats database

Genome: Paenibacillus polymyxa M1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
166923GACGAT-GACGAT-GAAGAT-GACTATDesign primers
454122AAAAAATAAAAATAATAAAAAAATADesign primers
501679GGATCGGTAGGCGTACCTGGGTTTGTAGGCGTACCTGGATCAGTAGGTGTACCCDesign primers
627723CAGGAA-GAGGAT-GAGGAT-GAGGAT-GAGGAT-GAGGATDesign primers
730520TCATGGATCAAC-AGATGGATCAAC-AGATGGATCAACDesign primers
777725CCCGGCAGGCCCAGCAGGCCCAGCAGGDesign primers
1193390TCAGAGGGAATCAGAAGGGAACAGAGGGATDesign primers
1410938CATGGGCGG-CATGGGCGG-AATGGGCGGDesign primers
1417509GCAGGAGCAATAGGACCAGCAGGACCAGCAGGACCAGCGGGAGCAATAGGACCADesign primers
1605346CGGTCCAGGTTATGGAGGACCAGGCTATGGAGGGCCAGGATATGGDesign primers
1784189TTATAAGTATAATTTTAATTATAADesign primers
2041534TTT-TTT-TAT-TGT-TTT-TTT-TTT-TTT-TDesign primers
2104113AAAAAACAAAACAAACAAAAATAAAACAAADesign primers
2355607AAATCC-ACAACC-ACAACC-ACAACC-ACAACC-ACAACCDesign primers
2458437ACCACGACCATGACCATGACCACAAACACGDesign primers
2473010CAGTACCAACGCCAGACC-CGGTGCCAACGCCAGATC-CAGTGCCAACACCAGATC-CAGTGCCAACGCCAGATC-CAGTGCCAACGCCAGATC-CAGTGCCAACGCCAGATC-CAGTGCCAACGCCAGATC-CAGTGCCAACGCCAGATC-CGGTACCAACACCAGATC-CAGTGCCAACGCCAGATC-CAGTGCCAACGCCAGATC-CTGTACCAACACCAGATCDesign primers
2477601GTCCAAGGACCTCAGGGTGTTCAAGGACCTCAAGGTGTTCAAGGGTCTCAGGGTDesign primers
2477665CACAAGGTGTTCAAGGACCGCAGGGTGTCCAAGGACCGCAGGGTGTCCAAGGACCTCAAGGTGTTCAAGGGCCTCAGGGTGCTCAAGGACCTCAAGGTGTTCAAGGCGTCCAAGGTGTCCAAGGACCTCAAGGTGTTCAAGGGCCTCAGGGTGCTCAAGGACCTCAAGGTGTTCAAGGCGDesign primers
2478033GTTCAAGGCCCTCAAGGCGACCAAGGCCCTCAAGGAGTTCAAGGCGTCCAAGGCDesign primers
2478204GTTCAAGGCGTCCAAGGCGATCAAGGCDesign primers
2478485TCAAGGCCCTCAAGGCGACCAAGGCCCTCAAGGAGTTCAAGGCGTCCAAGGCGADesign primers
2479056GGAGCCCAAGGCGATCAAGGACCTCAAGGCGTTCAAGGAGCCCAAGGCGACCAADesign primers
2479815GTTCAAGGCGTCCAAGGCGATCAAGGCDesign primers
2861303CCGGCGGAAGCGGCGGCGGAAGTGGCGGTGGAAGCGDesign primers
2991171TCATAGGTT-GCATAGGTT-GCATAGGTT-GCATAGGTTDesign primers
3058815CAGCAAGAAGCAGCAAGGAACAGCAGCAAGDesign primers
3135843CACAGTTACCTTTTTAGTAACTGGCGAGTTACCTTTTTGGTAACTGAACAGTTGCCTTTTGTGTAACTGDesign primers
3371999AGGAGT-TGGAGT-TGGAGT-TGGAGTDesign primers
3781323TTGTGCCTGTGCTTGTCCTGGTGCDesign primers
3849196CACAGTTACCTTTTTAGTAACTGACGAGTTACCTTTTTGGTAACTGAACAGTTGCCTTTTGTGTAACTGDesign primers
4245986GAAGAATAGGAGAATAGGAGAATADesign primers
4265972TGATATTGATAATTATATTGATTTDesign primers
4590829GCTTTGTCATGTTGTTCTGTCATGTTGCTTTGTCATATCDesign primers
4708718AGTTTC-TGTTTC-TGTTTC-TGTTTCDesign primers
4747662TCTTGACGATCTTGGCGATCCTGACGADesign primers
5050982CTGCTT-CTGCTT-CCGCTT-CAGCTTDesign primers
5391782TCATATCAGATCATCCCATATCTTADesign primers
5435701ATGAATATGGATATAAATATGACTDesign primers
5444625AATGATAATGAGAATCATAATCATDesign primers
5462417GTGGTC-GTGGTC-ATGGTC-GTGGTGDesign primers
5700674TTTAATTTTATTTTTATTTTTAAADesign primers
5801059TTCGTTGTTCACGTTGCCTGCTCCGTTGTTCACGTTGCCTGCTCCGTTGTTGACGTCGCTTGCDesign primers
5801123CTGTTGTCGACGTTGCTTGCT-CCGTTGTTCACGTTGCTTGCT-CCGTTGTCGACGTTGCTTGCT-CCGTTGTTCACGTTGCTTGTT-CCGTTGTTCACGTTGCTTGCT-CCGTTGTTCACGTTGCTTGCT-CCGTTGTTCACGTTGCTTGCT-CCGTTGTTCACGTTGCTTGCC-CCGTTGTTCACGTTGCTTGCC-CCGTTGTTCACGTTGCCTGCTDesign primers
5801381CCG-CCG-CCA-CTG-CCG-CCG-CTA-TTG-CCG-CCA-CCA-CCGDesign primers

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